Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30998.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 33 0.23
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 31 0.93
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 30 1.2
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 30 1.6
SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3) 30 1.6
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 29 2.2
SB_33778| Best HMM Match : SET (HMM E-Value=0.62) 29 2.2
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36) 28 6.6
SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 27 8.7
SB_56794| Best HMM Match : ResIII (HMM E-Value=0.63) 27 8.7
SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8) 27 8.7
SB_20520| Best HMM Match : Peptidase_A17 (HMM E-Value=6.16571e-44) 27 8.7
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4) 27 8.7
SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09) 27 8.7
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 33.5 bits (73), Expect = 0.13
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
FKC CG L +KTY Q K YC +H PK + L+N + + +
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272
Query: 420 SNNYVNEQIRG-YIRNSHEPE 479
EQ RG Y S +PE
Sbjct: 273 QYQRDFEQSRGRYTVISDDPE 293
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 175 FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
F+ NE QVDR G +FTF ++P + N P R I GR+ K +A ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156
Query: 355 RSVRATWTTPQWASEALSTC 414
++ + Q +EA+ C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 32.7 bits (71), Expect = 0.23
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQ 477
T T+ T YT+ +Y + T +TP + S TC + T++T+ + TS T+ +
Sbjct: 168 TSTTSYTSTTSYTSTTSYTPTPSYT-STPSYTSTTSYTCTTSYTSTTSYTCTTSYTSTTS 226
Query: 478 NCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTPAPS 591
+ T+ + T SY P T T T PS
Sbjct: 227 YTPTTSYTSTTSYT--SNPSYTPTPSYTPTTSYTSNPS 262
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 30.7 bits (66), Expect = 0.93
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +1
Query: 322 TKKYTALATYQRSVRATWTTPQWASEA---LSTCPKAITTS--TNRSEDTSGTAMSQNCL 486
T T AT + +AT +T Q A+EA LST TTS T+ +E T
Sbjct: 403 TTPTTTKATTPTTTKATAST-QTAAEANTFLSTQKTDATTSQSTSTTEATKSQTTKATTT 461
Query: 487 RSGATNGEASTRLQQGSYRVIPLTTSTGDSTPAPST 594
S +T +T + L+TST +T PST
Sbjct: 462 LSTSTTKATTTSSTSTTKATTTLSTSTTKATTTPST 497
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 6 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +1
Query: 334 TALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGATNGEA 513
T A SV T P+ S +T TT + T++ + G T+
Sbjct: 2829 TTAAPETTSVPKTTAAPETTSVPKTTAAPETTTLPKTTAAPETTSVPKTTAAPGTTSVPK 2888
Query: 514 STRLQQGSYRVIPLTTSTGDSTPAPST 594
+T + + +P TT+ ++TP P T
Sbjct: 2889 TTAAPETT--AVPKTTAAPETTPLPKT 2913
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +1
Query: 427 TTSTNRSEDTSGTAMS-------QNCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTPA 585
TT N S SGT +S ++ + S ++ +T + + V PLTT+ +ST A
Sbjct: 358 TTFANESTVVSGTTISPESTVAQESTIASESSGAPGTTESSEST--VEPLTTAASESTVA 415
Query: 586 PST 594
P T
Sbjct: 416 PGT 418
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
QLL H +R Q+ Q++ +Q+ Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326
>SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)
Length = 396
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQ 477
TIT ++ + TY +S AT +TP+ + L + K +R + + Q
Sbjct: 102 TITHTKNQSALGPGIITYDKSTGATGSTPKHLAR-LKSDVKVKQEKHDREGNNESSQPRQ 160
Query: 478 NCLRSGATNGEASTRLQQGSYRVIP 552
C S A + E+ T + ++ V P
Sbjct: 161 TCSSSPARSSESKTIVGSNNFDVEP 185
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 346 TYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGATNGEASTRL 525
T + S A TP+ +++A PKA T ST + S ++ L+ G+ + +
Sbjct: 1647 TPKASTDAAKVTPKASTDAPKVTPKASTDSTKVTPKAS-INTAKVALKVSTEAGKVTPKA 1705
Query: 526 QQGSYRVIP-LTTSTGDSTPAPST 594
+ +V P +T T TP ST
Sbjct: 1706 STDAAKVTPKASTDTAKVTPKAST 1729
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 319 KTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGA 498
K TA T + S TP+ +++A PKA T +T ++ S + L+S
Sbjct: 1715 KASTDTAKVTPKASTDTAKITPKASTDAAKVTPKASTEATEMTQKFSNVPATV-ALKSSN 1773
Query: 499 TNGEASTRLQQGSYRVIPLT--TSTG 570
+ + + + R+IP +STG
Sbjct: 1774 VEAKITPKSSTDAARLIPKASKSSTG 1799
>SB_33778| Best HMM Match : SET (HMM E-Value=0.62)
Length = 646
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 366 GHLDNSSVGIRSALNVPKSNNYVN-EQIRGYIRNSHE-PELSPIRGDQR*SVHASPAREL 539
GHLD+ +V R AL +P + +N E R ++NS + + DQ + ++ R L
Sbjct: 104 GHLDSFTV--RRALPLPLDSFTINPEASRLPLKNSFTFDDFRYLHFDQAPNTTSANNRAL 161
Query: 540 SRDTPDYQYGRFDASALHI 596
R+TP +Y R + I
Sbjct: 162 PRETPGTKYSRHQIQQVQI 180
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 433 STNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGDST 579
S S D S Q + +TN + +Q+GS ++IPL+ T ST
Sbjct: 366 SIPESTDASLKQKEQLAETATSTNSKVEVDIQEGSTKIIPLSEETVKST 414
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +1
Query: 316 RKTKK----YTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
RKT+K L +R V TW TP E + T+ R DT+ T + N
Sbjct: 727 RKTRKARDIIEELLGKRRKVPDTWHTPLGMKERRTVLDTRHDTNGTRW-DTNHTRLDAND 785
Query: 484 LRSGATNGEASTRLQQGSYRVIPLT 558
R + +R + SY++ P T
Sbjct: 786 SRQDMLSEHCVSRAARDSYQLSPFT 810
>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
Length = 967
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Frame = +3
Query: 255 KCAVCGTKLTLKTYYNN--QHWTEDK------EVYCSSHVP 353
KC VCGT+L L+ Y + Q ++ D+ +V C +HVP
Sbjct: 927 KCTVCGTQLLLQGYTKSHPQCFSIDRLDDGSLQVECQTHVP 967
>SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 337 ALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAM 471
ALA+ +S W P W SE PK TN + T +
Sbjct: 744 ALASKLKSSTLWWNGPSWLSETEEGWPKTEIRKTNAGAEEEKTTV 788
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 318 EDKEVYCSSHVPKIGPGHLDNSS-VGIRSAL-NVPKSNNYVNEQIRGYIR 461
+D+ H GP H+D G R++ NVP+S NY ++Q G R
Sbjct: 63 QDEIAQARRHTTASGP-HMDGQGQTGTRNSHENVPESRNYTDQQDGGRAR 111
>SB_56794| Best HMM Match : ResIII (HMM E-Value=0.63)
Length = 532
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 255 KCAVCGTKLTLKTYYNNQ------HWTEDKEVYCSSHVP 353
KC VCGT+L L+ Y + +D +V C + VP
Sbjct: 494 KCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQVECQTRVP 532
>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
Length = 441
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 398 KRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGRPTVKRPRVSS 529
+R+ R K + D R H E+P R V D R V RPRV S
Sbjct: 30 ERNLRVTKWNQERNVDHRKH-ERPVLRRVGDCKRINVVRPRVQS 72
>SB_20520| Best HMM Match : Peptidase_A17 (HMM E-Value=6.16571e-44)
Length = 655
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 337 ALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAM 471
ALA+ +S W P W SE PK TN + T +
Sbjct: 585 ALASKLKSSTLWWNGPSWLSETEEGWPKTEIRKTNAGAEEEKTTV 629
>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
Length = 647
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 398 KRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGRPTVKRPRVSS 529
+R+ R K + D R H E+P R V D R V RPRV S
Sbjct: 452 ERNLRVTKWNQERNVDHRKH-ERPVLRRVGDCKRINVVRPRVQS 494
>SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)
Length = 820
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 473 LMAVPDVSSDLFVDVVIAFGHVESAS---DAH*GVVQVARTDLWYVARAVYFF 324
L+ VPDV D +DV++ VE ++ D G + + D W ++ F
Sbjct: 604 LLGVPDVVGDAMMDVILGVTDVEVSNCELDEICGALSASSIDCWSAFLSILVF 656
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,238,365
Number of Sequences: 59808
Number of extensions: 437069
Number of successful extensions: 1338
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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