Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30998.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    31   0.58 
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    31   0.58 
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    29   1.8  
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    28   4.1  
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ...    28   5.4  
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    27   9.5  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRS 492
            LRS
Sbjct: 1616 LRS 1618


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRS 492
            LRS
Sbjct: 1616 LRS 1618


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +1

Query: 427 TTSTNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTP 582
           T ST RS+  +GT  S  C  S AT    ++ L  G+ ++   TT+TG++TP
Sbjct: 43  TPSTPRSDSGTGT-YSLRCRTSTATAVSTTSSLP-GTPKLKCKTTTTGETTP 92


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 323 QRSILL*PRTKDRSGPLGQLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQP 469
           Q   LL  R + +     Q    HQ++ Q+ Q+Q  +Q+  Q+ HQ QP
Sbjct: 112 QMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP 160


>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 345

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 CAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVP 353
           C +CG  + +  YY+ +    D ++YC+ + P
Sbjct: 83  CDLCGKSINVNLYYSCKICDFDVDLYCAKYPP 114


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 394 SEALSTCPKAITTSTNRSEDTSGTAMSQNCLR 489
           +EAL  C K + T+  R + T  TAM    LR
Sbjct: 251 NEALDLCEKGLGTAKTREDTTEFTAMRIKTLR 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,643
Number of Sequences: 28952
Number of extensions: 287245
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)