Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30997.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 60 1e-09
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 36 4e-05
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 32 0.30
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 32 0.30
12_02_1010 + 25269721-25269787,25270162-25270308,25270407-252707... 31 0.92
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 30 1.6
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 30 1.6
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 29 2.1
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 29 2.1
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 4.9
12_02_1011 + 25276077-25276143,25276575-25276721,25276855-252769... 27 8.6
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
ESD+EL+ + ++ D D Q MGDP+ AM A SE K +EAI+
Sbjct: 322 ESDLELEGD-IVESDHQDPPQKMGDPSIDVTEENRDASQEAKSKAMEAMSEGKLEEAIDH 380
Query: 443 YTAAIXLNPQSALLFAKRGQV-XXTKQTXCMY*RLHTALELNCDSA 577
T AI LNP SA+++ R V K+ + ALE+N DSA
Sbjct: 381 LTKAILLNPLSAIMYGTRASVFIKMKKPVAAIRDANAALEINPDSA 426
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATF 176
+A ++ +L++FVE CK P LL P LAFF+DYL SLG LP A F
Sbjct: 227 DASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAF 272
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 35.5 bits (78), Expect(2) = 4e-05
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 419 KYDEAINLYTAAIXLNPQSALLFAKRGQV-XXTKQTXCMY*RLHTALELNCDSAXLQISE 595
K DEAI T AI LNP SA+ +A R + +K+ AL++N DSA S
Sbjct: 494 KLDEAIEHLTEAIVLNPTSAIAYATRAVIFVKSKKPNAAIRDADAALKINPDSAKGYKSR 553
Query: 596 G 598
G
Sbjct: 554 G 554
Score = 29.1 bits (62), Expect(2) = 4e-05
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQK 421
ESD+EL+ E V PD D Q MGDP+ + AFSE K
Sbjct: 414 ESDIELEGEAV-EPDN-DPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSEGK 464
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
AF E+++ +AIN YT AI LN + A ++ R
Sbjct: 499 AFKEKQWQKAINFYTEAIKLNNKVATYYSNR 529
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
F EQKY +A+ YT AI NP+ +++ R
Sbjct: 424 FKEQKYPDAVKHYTEAIRRNPKDPKVYSNR 453
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
AFS +Y+EA +T AI L P + +L++ R
Sbjct: 12 AFSAGRYEEAARHFTDAIALAPGNHVLYSNR 42
>12_02_1010 +
25269721-25269787,25270162-25270308,25270407-25270783,
25271273-25271407,25272059-25272211,25272761-25272862,
25273380-25273550,25273659-25273738,25273860-25273917
Length = 429
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
A AF+E +Y AI YT A+ P A LFA R
Sbjct: 309 AKEAFAEGEYITAIYFYTKALEKAPLDATLFANR 342
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
F +QKY EA+ Y+ A+ NP+ +++ R
Sbjct: 574 FKQQKYPEAVKHYSEALRRNPKDPRVYSNR 603
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
+AF E Y AI YT A+ L+P A L++ R
Sbjct: 365 KAFEEGDYAGAIIFYTEAMKLDPADATLYSNR 396
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKRGQ 502
F +++Y EA YT A+ NP+ +F+ R Q
Sbjct: 196 FKQKRYQEAAMHYTEAMKKNPKDPRVFSNRAQ 227
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIXLNPQ----SALLFAKR 496
+AF KY EA+ YTAA+ N + SA+ FA R
Sbjct: 809 KAFQAGKYSEAVEHYTAALLSNTESPRFSAICFANR 844
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 154 TPRDIR*SLKNANCGWCNSC 95
T + + L+ CGWCNSC
Sbjct: 756 TDQKLSVELRKEKCGWCNSC 775
>12_02_1011 +
25276077-25276143,25276575-25276721,25276855-25276986,
25277130-25277269,25277481-25277567,25277776-25277904,
25278493-25278645,25278891-25278992,25279507-25279677,
25279773-25279852,25280491-25280524
Length = 413
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
AF++ Y AI YT A+ +P A LFA R
Sbjct: 304 AFAKGDYLTAIYFYTLAMDKSPLDATLFANR 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,454
Number of Sequences: 37544
Number of extensions: 216509
Number of successful extensions: 423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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