Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30997.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 38   0.005
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
 Frame = +2

Query: 257 EPESD---VELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ--- 418
           +PES+    ++D  GVI PD  DE   MGD +                            
Sbjct: 3   KPESEKGVFDIDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTL 61

Query: 419 -KYDEAINLYTAAIXLNPQSALLFAKRGQ-VXXTKQTXCMY*RLHTALELNCDSAXL 583
              +EAI L+T AI  NP SA LFAKR       K+          A ++N DSA +
Sbjct: 62  GNLEEAIKLFTDAIMKNPHSAPLFAKRASCFIRMKKPNAAIRDCDKAAQINPDSAQI 118


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKRGQV 505
           AF +QKY+EA+ LYT A+  +  +   +  R Q+
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQL 163


>SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 419 KYDEAINLYTAAIXLNPQSALLFAKRG 499
           +YD+A++ + AA+   P+ ALL+ + G
Sbjct: 223 EYDKAVDCFQAAVIARPEDALLWNRLG 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,027
Number of Sequences: 59808
Number of extensions: 261521
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)