Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30997.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te...    66   1e-11
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    58   4e-09
At4g11260.1 68417.m01822 phosphatase-related low similarity to p...    36   0.027
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p...    35   0.036
At4g23570.2 68417.m03396 phosphatase-related low similarity to p...    35   0.047
At4g23570.1 68417.m03395 phosphatase-related low similarity to p...    35   0.047
At1g12270.1 68414.m01419 stress-inducible protein, putative simi...    32   0.25 
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    31   0.44 
At4g12400.1 68417.m01960 stress-inducible protein, putative simi...    31   0.58 
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-...    30   1.3  
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s...    28   4.1  
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re...    28   4.1  

>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
           tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
           similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
           sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 380

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 43/113 (38%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = +2

Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
           ESDVELD   V+ PD  +  Q MGDP                  AM A S+ ++DEAI  
Sbjct: 76  ESDVELDNSDVVEPDN-EPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEH 134

Query: 443 YTAAIXLNPQSALLFAKRGQV-XXTKQTXCMY*RLHTALELNCDSAXLQISEG 598
            T A+ LNP SA+L+A R  V    K+        + AL+ N DSA    S G
Sbjct: 135 LTKAVMLNPTSAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKSRG 187



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = +3

Query: 39  NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDF 191
           +A Q+ +L+ FVE  K  P +LH P L FFK+YL SLG  +P      +D+
Sbjct: 3   DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDY 53


>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = +2

Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
           ESDVEL+ +  + PD  D  Q MGD +                 AM A SE  +DEAI  
Sbjct: 88  ESDVELEGD-TVEPDN-DPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEH 145

Query: 443 YTAAIXLNPQSALLFAKRGQV-XXTKQTXCMY*RLHTALELNCDSAXLQISEG 598
            T AI LNP SA+++  R  V    K+        + ALE+N DSA    S G
Sbjct: 146 LTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRG 198



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +3

Query: 39  NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 167
           ++ +L +LK F++ CK+ P LL  P L+FF+DYL SLG  +PT
Sbjct: 2   DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44


>At4g11260.1 68417.m01822 phosphatase-related low similarity to
           protein phosphatase T [Saccharomyces cerevisiae]
           GI:897806; contains Pfam profiles PF00515: TPR Domain,
           PF05002: SGS domain, PF04969: CS domain
          Length = 358

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 395 AMRAFSEQKYDEAINLYTAAIXLNPQSALLFAKRGQ 502
           A  AF +  +D A++LY+ AI L+P  A  FA R Q
Sbjct: 9   AKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQ 44


>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
           putative similar to SP|P53042 Serine/threonine protein
           phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
           T) (PPT) {Rattus norvegicus}; contains Pfam profiles
           PF00149: Ser/Thr protein phosphatase, PF00515: TPR
           Domain
          Length = 484

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +2

Query: 395 AMRAFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           A  AF   KY  AI+LYT AI LN  +A+ +A R
Sbjct: 20  ANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANR 53


>At4g23570.2 68417.m03396 phosphatase-related low similarity to
           phosphoprotein phosphatase [Mus musculus] GI:567040;
           contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
           domain, PF04969: CS domain
          Length = 350

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 395 AMRAFSEQKYDEAINLYTAAIXLNPQSALLFAKRGQ 502
           A  AF +  +D A++LY+ AI L+P  A  FA R Q
Sbjct: 9   AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQ 44


>At4g23570.1 68417.m03395 phosphatase-related low similarity to
           phosphoprotein phosphatase [Mus musculus] GI:567040;
           contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
           domain, PF04969: CS domain
          Length = 350

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 395 AMRAFSEQKYDEAINLYTAAIXLNPQSALLFAKRGQ 502
           A  AF +  +D A++LY+ AI L+P  A  FA R Q
Sbjct: 9   AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQ 44


>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 572

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           F EQKY EAI  YT AI  NP     ++ R
Sbjct: 394 FKEQKYPEAIKHYTEAIKRNPNDHKAYSNR 423



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           AFS   +  AIN +T AI L P + +LF+ R
Sbjct: 12  AFSSGDFTTAINHFTEAIALAPTNHVLFSNR 42


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           F EQKY +A+  YT AI  NP+    ++ R
Sbjct: 393 FKEQKYPDAVRHYTEAIKRNPKDPRAYSNR 422



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           AFS   ++ A+N +T AI L P + +LF+ R
Sbjct: 12  AFSSGDFNSAVNHFTDAINLTPTNHVLFSNR 42


>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 530

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           F EQKY EA+  Y+ AI  NP     ++ R
Sbjct: 380 FKEQKYPEAVKHYSEAIKRNPNDVRAYSNR 409



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           AFS   Y  AI  +T AI L+P + +L++ R
Sbjct: 12  AFSSGDYATAITHFTEAINLSPTNHILYSNR 42


>At1g68185.1 68414.m07789 ubiquitin-related similar to
           ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
           yeast]
          Length = 215

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +2

Query: 254 KEPESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEA 433
           +E E   + ++E    P     +Q   +P                   +R F+++K++  
Sbjct: 108 QEVEESAKREVEESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERV 167

Query: 434 INLYTAAIXLNPQS 475
           I LYT    L+PQ+
Sbjct: 168 IKLYTDKAKLDPQN 181


>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
           subunit, putative similar to component of chloroplast
           outer membrane translocon Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profiles PF01425: Amidase,
           PF00515: TPR Domain
          Length = 603

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           A+  +++++A+N YT AI LN  +A  +  R
Sbjct: 498 AYKGKQWNKAVNFYTEAIKLNGANATYYCNR 528


>At1g56440.1 68414.m06491 serine/threonine protein
           phosphatase-related similar to SP|Q60676
           Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
           (PP5) (Protein phosphatase T) (PPT) Mus musculus,
           Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
           sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
           Domain
          Length = 476

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 407 FSEQKYDEAINLYTAAIXLNPQSALLFAKR 496
           F ++K++EAI+ Y+ +I L+P +A+ +A R
Sbjct: 95  FKQKKFNEAIDCYSRSIALSP-NAVTYANR 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,651
Number of Sequences: 28952
Number of extensions: 180697
Number of successful extensions: 406
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)