Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30995.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 237 VRHRVGPPALWDLAADKQTLQNEQPL 314
           + H++ PP L D     ++L  + P+
Sbjct: 97  IHHQIRPPILHDTQPMCESLNTQPPV 122


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 237 VRHRVGPPALWDLAADKQTLQNEQPL 314
           + H++ PP L D     ++L  + P+
Sbjct: 97  IHHQIRPPILHDTQPMCESLNTQPPV 122


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 159 HKNH*GSRRRNSDSN 203
           HKN+ G  + N D N
Sbjct: 456 HKNNLGDSKNNQDGN 470


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 159 HKNH*GSRRRNSDSN 203
           HKN+ G  + N D N
Sbjct: 348 HKNNLGDSKNNQDGN 362


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 237 VRHRVGPPALWDLAADKQTLQNEQPL 314
           + H++ PP L D     ++L  + P+
Sbjct: 97  IHHQIRPPILHDTQPMCESLNTQPPV 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,050
Number of Sequences: 336
Number of extensions: 2356
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)