Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30995.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 140 9e-35
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 42 6e-05
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 33 0.028
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.2
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 7.3
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 7.3
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 9.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 9.7
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 140 bits (340), Expect = 9e-35
Identities = 66/100 (66%), Positives = 79/100 (79%), Gaps = 2/100 (2%)
Frame = +3
Query: 249 VGPPALWDLAADKQTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSV 422
+ P + WD+AAD+Q + EQPLQVARCTKII + + K Y+IN+KQ AKFVV L + V
Sbjct: 74 LAPISFWDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERV 133
Query: 423 APTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
+PTDIEEGM VG DRNKY I +PLPPKIDP+VTMMQVEEK
Sbjct: 134 SPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEK 173
Score = 63.7 bits (148), Expect = 2e-11
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +1
Query: 109 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLA 255
LDEGDI LLKSY G Y + + ++E + V+KR+N+ GIKESDTGLA
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLA 75
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 41.9 bits (94), Expect = 6e-05
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3
Query: 363 KYIINVKQFAKFVVDLQDSVAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEE 539
K ++ V K+VVD+ + +I+ + V + + YQ+ LP K+DP V++M VE+
Sbjct: 80 KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEK 138
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.028
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 420 VAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
V P ++ G +GV+++ Y I LP + D V M+V+EK
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEK 179
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 246 RVGPPALWDLA--ADKQTLQNEQPLQVARCTKIINADSNDPKYII 374
R+G P+ L+ +D LQ+ + + + D+NDP+Y++
Sbjct: 30 RIGTPSTISLSENSDLSKLQSTNDFESREDLSLTSDDNNDPEYVM 74
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 258 PALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFV--VDLQDSVAPT 431
P W+L A + + NE + + +NAD + + V F K + D + S+
Sbjct: 227 PLHWELLARARAVDNEMFVACCAPARDMNADYHSWGHSTVVDPFGKVIATTDEKPSIVYA 286
Query: 432 DIEEGMXVGVDRNKYQIH 485
DI+ + + RN I+
Sbjct: 287 DIDPSV-MSTARNSVPIY 303
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 148 QGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLALQP 264
Q + ++K+V+EG M+RV +++ A+QP
Sbjct: 326 QEEKDSLLKKVQEGASLAMQRVQNKHDLEKKRLQSAIQP 364
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 237 LFDACQFINPLHYCLNSFFYFLNDFCVLSLAV*LQKRNI 121
L+ +C F + Y LNS FY L + + ++ + + ++ +
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTL 303
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 342 NADSNDPKYIINVKQF 389
N D DPK++I+V++F
Sbjct: 135 NTDGYDPKFLISVRKF 150
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 127 QYHPRREILFLFPALLYHLSLCAYHSLNGQAF 32
+Y R ++ +FP L ++S+ +YHSL F
Sbjct: 790 KYSSRLDLNRVFPLLPKNISMKSYHSLFSSQF 821
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,669
Number of Sequences: 5004
Number of extensions: 38012
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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