Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30995.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 160 6e-40
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 160 6e-40
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 48 5e-06
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 45 5e-05
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 33 0.15
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369... 32 0.26
02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855... 32 0.26
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 5.6
05_01_0105 + 696604-696846,696880-697989 27 9.9
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 160 bits (389), Expect = 6e-40
Identities = 73/98 (74%), Positives = 84/98 (85%)
Frame = +3
Query: 249 VGPPALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAP 428
+ PP+ WDL +DKQ +Q EQPLQVARCTKII+ +++D KY+INVKQ AKFVV L D V+P
Sbjct: 65 LAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSP 124
Query: 429 TDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
TDIEEGM VGVDRNKYQI IPLPPKIDP+VTMM VEEK
Sbjct: 125 TDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 162
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +1
Query: 109 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLA 255
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESDTGLA
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLA 66
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 160 bits (389), Expect = 6e-40
Identities = 73/98 (74%), Positives = 84/98 (85%)
Frame = +3
Query: 249 VGPPALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAP 428
+ PP+ WDL +DKQ +Q EQPLQVARCTKII+ +++D KY+INVKQ AKFVV L D V+P
Sbjct: 65 LAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSP 124
Query: 429 TDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
TDIEEGM VGVDRNKYQI IPLPPKIDP+VTMM VEEK
Sbjct: 125 TDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 162
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +1
Query: 109 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLA 255
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESDTGLA
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLA 66
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 363 KYIINVKQFAKFVVDLQDSVAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEE 539
K ++ V K+VVD+ S+ T I V + + Y +H+ LP K+DP V +M+VE+
Sbjct: 101 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEK 159
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 369 IINVKQFAKFVVDLQDSVAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEE 539
I+ V K+VVD+ S+ T + V + + Y +H+ LP K+DP V +M+VE+
Sbjct: 125 ILLVHPEGKYVVDVDKSIDITKLSPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEK 181
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/76 (25%), Positives = 28/76 (36%)
Frame = +3
Query: 258 PALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDI 437
P +W + T N + C K N D K ++ K K V+DL P+D
Sbjct: 678 PFIWGSIPNSSTTINFDMSNIHLCHKQYNVPPTDEKMVLKEKSQDKHVIDLNIPQVPSDY 737
Query: 438 EEGMXVGVDRNKYQIH 485
E + V + H
Sbjct: 738 ESAVSYIVPSSDKNTH 753
>06_01_0511 +
3688788-3688880,3689050-3689166,3689959-3690066,
3690634-3690825,3691010-3691201,3691484-3691602,
3691740-3691827,3692155-3692274,3692378-3692518,
3693065-3693142
Length = 415
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 420 VAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
V P ++ G VGV+++ Y I LP + D V M+V+EK
Sbjct: 116 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 156
>02_05_1126 -
34284733-34284810,34285151-34285291,34285424-34285543,
34285787-34285874,34285962-34286080,34286437-34286628,
34286802-34286993,34287309-34287416,34287983-34288099,
34288214-34288315
Length = 418
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 420 VAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
V P ++ G VGV+++ Y I LP + D V M+V+EK
Sbjct: 119 VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 159
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 384 QFAKFVVDLQDSVAPTDIEEG 446
QFA F++D++D + P D+E G
Sbjct: 192 QFAIFLIDVRDGLQPLDLEVG 212
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 127 ALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTG-IKESDTG 249
A ++ G+G+ ++ +++EE I + +R N+L G KE ++G
Sbjct: 206 AEVEDKGKGKVNEVNEDLEEEISLLARRFNDLLGRRKERESG 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,782
Number of Sequences: 37544
Number of extensions: 240414
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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