Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30995.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6286| Best HMM Match : No HMM Matches (HMM E-Value=.)              126   9e-30
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          64   7e-11
SB_6665| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   2e-07
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)                  28   5.8  
SB_52592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)                 27   7.6  

>SB_6286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score =  126 bits (305), Expect = 9e-30
 Identities = 60/69 (86%), Positives = 61/69 (88%)
 Frame = +3

Query: 249 VGPPALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAP 428
           + PPALWDLAADKQTL  EQPLQVARCTKIINADS D KYIINVKQFAKFVVDL D VAP
Sbjct: 33  LAPPALWDLAADKQTLHGEQPLQVARCTKIINADSEDAKYIINVKQFAKFVVDLGDQVAP 92

Query: 429 TDIEEGMXV 455
           TDIEEGM V
Sbjct: 93  TDIEEGMRV 101


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 459 VDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
           VDRNKYQIHIPLPPKIDPTVTMMQVEEK
Sbjct: 51  VDRNKYQIHIPLPPKIDPTVTMMQVEEK 78


>SB_6665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 25/28 (89%), Positives = 25/28 (89%)
 Frame = +3

Query: 372 INVKQFAKFVVDLQDSVAPTDIEEGMXV 455
           INVKQFAKFVVDL D VAPTDIEEGM V
Sbjct: 63  INVKQFAKFVVDLGDQVAPTDIEEGMRV 90


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 345  ADSNDPKYIINVKQFAKFVVDLQD 416
            ADS+DP Y   V+ FAK +VD  D
Sbjct: 2311 ADSSDPTYWPRVQSFAKNIVDYFD 2334


>SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)
          Length = 261

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 367 YFGSFESALMIFVHRATCSGCS----FCSVCLSAARSHKAGGP 251
           Y+G   +A         CS CS    F  VC+S  + HKA  P
Sbjct: 27  YYGDSHAAGKCKAFGQVCSKCSKKNRFARVCMSTRQDHKASQP 69


>SB_52592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 403 TTNFANCFTLIMYFGSFESALMIFVHRATCSGC 305
           T ++  C  L+M+ GS+E  + + +H  +   C
Sbjct: 68  TGSYERCMRLVMHTGSYERCMRLVMHTGSYERC 100


>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
          Length = 867

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 157 YTKIIKEVEEGIQTVMKRVNELTGIKESDTGLALQPCG 270
           Y+  ++E ++ I    K V E+T   ES T +A Q CG
Sbjct: 590 YSDKVQENKDAISKAEKSVVEMTRKIESTTAMAAQYCG 627


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,095
Number of Sequences: 59808
Number of extensions: 283817
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)