Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30995.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 160 6e-40
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 136 7e-33
At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00... 60 1e-09
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 48 5e-06
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 47 1e-05
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.17
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 32 0.22
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 3.6
At1g43000.1 68414.m04950 zinc-binding family protein similar to ... 28 3.6
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 27 6.2
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 27 6.2
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 160 bits (388), Expect = 6e-40
Identities = 73/98 (74%), Positives = 83/98 (84%)
Frame = +3
Query: 249 VGPPALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAP 428
+ PP+ WDL +DKQ +Q EQPLQVARCTKII+ ++ D KY+INVKQ AKFVV L D V+P
Sbjct: 65 LAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSP 124
Query: 429 TDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
TDIEEGM VGVDRNKYQI IPLPPKIDP+VTMM VEEK
Sbjct: 125 TDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 162
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +1
Query: 109 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLA 255
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESDTGLA
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTGLA 66
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 136 bits (330), Expect = 7e-33
Identities = 60/98 (61%), Positives = 76/98 (77%)
Frame = +3
Query: 249 VGPPALWDLAADKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAP 428
+ PP WDL +DKQ +Q EQPL VA CT+II+ ++ D KY++++K+ K+VV L D +P
Sbjct: 102 LAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASP 161
Query: 429 TDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
TDIE GM VGVD+ KYQI IPLPPKIDP+VTMM VEEK
Sbjct: 162 TDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEK 199
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 118 GDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLA 255
G +++ + Y+ IK+VE+ I + +++ L GIKESDTGLA
Sbjct: 59 GSTEASEAHFEEPYSARIKKVEKEINELAEKICNL-GIKESDTGLA 103
>At1g53790.1 68414.m06122 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 444
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +1
Query: 109 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLA 255
LDE DIAL+K+YG Y+ IK+VE+ I+ + +++N+L GIKESDTGLA
Sbjct: 10 LDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTGLA 58
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 363 KYIINVKQFAKFVVDLQDSVAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEE 539
K ++ V K+VVD+ S+ T I V + + Y +H+ LP K+DP V +M+VE+
Sbjct: 96 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEK 154
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 363 KYIINVKQFAKFVVDLQDSVAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEE 539
K ++ V K+VVD+ S+ T + V + + Y +H+ LP K+DP V +M+VE+
Sbjct: 96 KVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEK 154
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 420 VAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
V P ++ G VGV+++ Y I LP + D V M+V+EK
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 165
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 420 VAPTDIEEGMXVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 542
V P ++ G VGV+++ Y I LP + D V M+V+EK
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEK 164
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 269 PQGWRANPVSDSLMPVSSLTLFITV*IPSSTSLMIFV 159
P GW +P D +T+ V +P T LMI V
Sbjct: 652 PVGWLYSPAIDGFSKCYMITIMAAVGLPMETVLMILV 688
>At1g43000.1 68414.m04950 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 216
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 316 CSGCSFCSVCLSAARSHK 263
CSG +FCS CL+ R+H+
Sbjct: 42 CSGNAFCSSCLAHHRTHR 59
>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 235
Score = 27.9 bits (59), Expect = 4.7
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 478 WYLLRSTPTXMPSSISVGATESCKSTTNFANCFTLIMYFGSFESALMIFVHRA-TCSGCS 302
WYLLRS+P ++ S T+ ST N S +L IF A T
Sbjct: 24 WYLLRSSPFNRTTAASTFFTDP-SSTPGGLN--------PSIIKSLPIFTFSAVTALFAM 74
Query: 301 FCSVCLSAARSHKAG 257
CSVCLS + +++G
Sbjct: 75 ECSVCLSEFKDNESG 89
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 546 SVSPRPASW*PLDLFSEAGVCESGIYYDPHQPSCLLQYQWVRRSLVN 406
S SP+ +L + ++ YY PH S ++W R+SL++
Sbjct: 295 STSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMD 341
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 546 SVSPRPASW*PLDLFSEAGVCESGIYYDPHQPSCLLQYQWVRRSLVN 406
S SP+ +L + ++ YY PH S ++W R+SL++
Sbjct: 295 STSPQAVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMD 341
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,022
Number of Sequences: 28952
Number of extensions: 196452
Number of successful extensions: 507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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