Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30994.Seq
         (385 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O78941 Cluster: Putative uncharacterized protein; n=1; ...    34   0.81 
UniRef50_Q7RLQ0 Cluster: Putative uncharacterized protein PY0249...    31   5.7  
UniRef50_Q674Q0 Cluster: NADH dehydrogenase subunit II; n=1; Bem...    31   7.5  
UniRef50_Q20EU1 Cluster: Chloroplast envelope membrane protein; ...    31   7.5  
UniRef50_UPI00006CB00E Cluster: hypothetical protein TTHERM_0023...    31   9.9  
UniRef50_A5JZX3 Cluster: Putative uncharacterized protein; n=1; ...    31   9.9  

>UniRef50_O78941 Cluster: Putative uncharacterized protein; n=1;
           Agrocybe aegerita|Rep: Putative uncharacterized protein
           - Agrocybe aegerita (Black poplar mushroom)
          Length = 107

 Score = 34.3 bits (75), Expect = 0.81
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +1

Query: 205 LLHLFPCIISMFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFISTYYASIWYINK*YLL 384
           LL  F  I   F+V F Y++F+  S+L   L    S+Y    FI+ Y+ S  YI+  +L+
Sbjct: 16  LLLYFFIIAIFFLVVFIYFLFVRYSTL---LLFRVSNYNSFFFITHYFISYLYISPPFLI 72


>UniRef50_Q7RLQ0 Cluster: Putative uncharacterized protein PY02490;
           n=8; Eukaryota|Rep: Putative uncharacterized protein
           PY02490 - Plasmodium yoelii yoelii
          Length = 2699

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -3

Query: 218 NKCNNQFATSIAIFY*IIGMTHISFKLFFTGKVFLSIR 105
           NKCNN F TS + FY  I       K FF G V   I+
Sbjct: 510 NKCNNTFLTSCSTFYPNISPFVYGNKSFFPGNVMPMIQ 547


>UniRef50_Q674Q0 Cluster: NADH dehydrogenase subunit II; n=1;
           Bemisia tabaci|Rep: NADH dehydrogenase subunit II -
           Bemisia tabaci (Sweetpotato whitefly)
          Length = 319

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 205 LLHLFPCIIS--MFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFISTYYASIWYI 366
           L+ L P I+   +F  + F ++ IS+S     L LNNS  ++ +  S+     W+I
Sbjct: 120 LMKLIPLILLYYLFSTSSFSFVLISSSFFGSLLGLNNSVIQKTMGFSSMITVCWFI 175


>UniRef50_Q20EU1 Cluster: Chloroplast envelope membrane protein;
           n=1; Oltmannsiellopsis viridis|Rep: Chloroplast envelope
           membrane protein - Oltmannsiellopsis viridis (Marine
           flagellate)
          Length = 352

 Score = 31.1 bits (67), Expect = 7.5
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 223 CIISMFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFISTY 345
           C++++ I+  F + F  T  L  C++   + Y+  +F+++Y
Sbjct: 58  CLLTLIIIPLFIHFFAKTVFLTPCIEYVWNTYKTDIFLNSY 98


>UniRef50_UPI00006CB00E Cluster: hypothetical protein
           TTHERM_00237580; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00237580 - Tetrahymena
           thermophila SB210
          Length = 623

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 276 SRNKNVIEKCNNEHTNNAWK*MQ*PVR-YINSNILLNNWNDP 154
           S  K  +E+ N  +TN+       P   Y+N+N+++NN+N+P
Sbjct: 505 SNLKQDVEEINQTNTNDQQLPANTPNNIYLNNNVIINNYNEP 546


>UniRef50_A5JZX3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 754

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 205 LLHLFPCIISMFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFISTYY 348
           +L +FP  I     A+F++IF    SL  CL+  NS + +  FI  ++
Sbjct: 662 ILLIFPSFILKIYFAYFFFIFPIFGSLK-CLEEKNSIHNKIYFICYFF 708


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,809,641
Number of Sequences: 1657284
Number of extensions: 5751145
Number of successful extensions: 9897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9887
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)