Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30994.Seq
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120...    27   5.1  
02_04_0217 + 20992238-20992397,20992488-20992792,20992910-209930...    27   5.1  
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    26   8.9  

>07_03_1606 +
           28111158-28111328,28111431-28111549,28111984-28112024,
           28112654-28112713,28112812-28112858,28112939-28113133,
           28113236-28113282,28113363-28113429,28113521-28113621,
           28113725-28113826,28113904-28114042,28114120-28114182,
           28114323-28114406,28114981-28115295
          Length = 516

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 205 LLHLFPCIISMFIVAFFYYIFISTSSLAVCLDLNNSHYRRPLFISTY 345
           L+H+   ++  F+  FFY +F+S++ L V   L +++  + L+I  +
Sbjct: 183 LVHIDAAVVLKFLGNFFY-LFLSSTFLGVFAGLLSAYIIKKLYIGRH 228


>02_04_0217 +
           20992238-20992397,20992488-20992792,20992910-20993038,
           20993476-20993631
          Length = 249

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 223 CIISMFIVAFFYYIFISTSS-LAVCLDLNNSHYRRPLFISTYYASIW 360
           C+  +F+    Y   ++TS+ L +C+D+   H++    +   YA IW
Sbjct: 185 CLDEVFLSLDDYDELLATSNYLRICMDIVFYHHKEKRKVGGAYAIIW 231


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 145 LNYSLLGRYFYLSGGLSV*LKILQFV 68
           LNY LL  Y YLSG + V  +I  F+
Sbjct: 653 LNYQLLILYAYLSGNIRVHCRIRPFL 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,015,513
Number of Sequences: 37544
Number of extensions: 130532
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)