Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30994.Seq
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   1.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   1.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 LNNSHYRRPLFISTYYASIWYINK*Y 378
           L + HYR+P  +S  Y+S  Y+N  Y
Sbjct: 361 LQHLHYRQPPTLSESYSS--YVNSMY 384


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 254 KNATMNILIMHGNKCNNQFATSIAI 180
           KN  + IL  HG +CN+   TSI +
Sbjct: 89  KNPKLGILGTHGRQCND---TSIGV 110


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 254 KNATMNILIMHGNKCNNQFATSIAI 180
           KN  + IL  HG +CN+   TSI +
Sbjct: 90  KNPKLGILGTHGRQCND---TSIGV 111


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 212 IYFHALLVCSLLH 250
           IYFH++++ SLL+
Sbjct: 459 IYFHSIVLGSLLN 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,252
Number of Sequences: 438
Number of extensions: 1937
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)