Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30994.Seq
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy...    26   7.5  
At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identic...    26   9.9  

>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
           cytosolic / cyclophilin / rotamase (ROC3) identical to
           cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
          Length = 173

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 1   KTSKRIVIKDCGQIA 45
           +TSK +VI DCGQI+
Sbjct: 159 RTSKPVVIADCGQIS 173


>At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identical
           to AtHVA22a [Arabidopsis thaliana] GI:4884932
          Length = 177

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 313 HYRRPLFISTYYASIWYINK 372
           H+ RP+F++    +IWY+ K
Sbjct: 100 HFVRPVFVNPRSINIWYVPK 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,987
Number of Sequences: 28952
Number of extensions: 120932
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)