Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30993.Seq
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    27   1.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   2.8  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           25   3.7  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    24   8.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   8.5  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    24   8.5  

>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 315 IWSIP--ILNFKINIICPNFFVAVP 247
           IW I   ILN  +N ICP+  +++P
Sbjct: 259 IWGITAVILNMYLNSICPDALISIP 283


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 292 FQN*YNLPKFLCCSPVMMHSTLITFSNCF 206
           F+N YN  + L  +P ++ + +I FS+ F
Sbjct: 422 FRNLYNYKELLAFAPFVVQNIIIVFSSSF 450


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 122 DFIRTPPTQIELHKIMI---NIEKSQEKLNLKAIRKCYECAVHHH 247
           D I +    + + K+MI   N+E S+E LNL    +C+   V  H
Sbjct: 41  DSIISRAKAVGVEKMMITGDNVENSEEALNLATNYECFTSTVGVH 85


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 292 IENGNAPNSAV-VYRRAVGMLKKDIVDEFIRDQTLSKIKXY*N 417
           I++G     A+ VY     +  KD+ +E I+D T  ++  + N
Sbjct: 248 IDSGQVGGCAIDVYEGERNLFYKDLSNEVIKDSTFQRLVNFPN 290


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 234  LCIITGLQQRNLG 272
            +C++ GL+QRNLG
Sbjct: 1265 VCLLEGLRQRNLG 1277


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 265 IWADYINFEIENGNAPNSAVVYRRAVGMLKK 357
           +W  YI  E++N N  ++  ++ RAV  L +
Sbjct: 106 LWLKYIECEMKNRNINHARNLFDRAVTQLPR 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,413
Number of Sequences: 5004
Number of extensions: 31658
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)