Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30991.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   5.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   5.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.6  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 276 WTDTKNELSTQKNQIELLQFCRRDFFSSEPPY 181
           W +T+N   +  N +E+L    R+   S P Y
Sbjct: 764 WANTENARYSTSNALEILDMLLREKIESAPRY 795


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 287  NAWDGPILKMNCQRRRIR*NYCSFAAGTFFPRNRPTSD 174
            N W  P L++NC    +   Y +   G+F+ + R T D
Sbjct: 1434 NLWK-PHLQLNCLSDEVAQYYITLCKGSFYYQMRNTED 1470


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 372 WVLSWATHALRDLRQWPPPXVYF 440
           W L+    A  D+R WPP  ++F
Sbjct: 403 WTLTDLADAFLDVRLWPPIFMFF 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,857
Number of Sequences: 5004
Number of extensions: 31472
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)