Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30991.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922...    52   2e-07
10_08_0050 + 14469879-14470072,14470620-14471094                       29   1.8  
04_04_1220 + 31843628-31844755                                         29   3.2  
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    28   5.6  
10_01_0164 + 1863890-1866253                                           27   9.9  
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    27   9.9  

>04_04_1370 -
           32990002-32990244,32990950-32991943,32992019-32992240,
           32993413-32993543
          Length = 529

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/49 (51%), Positives = 30/49 (61%)
 Frame = -3

Query: 534 LLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRAMRVW 388
           L  DGG      LMQ+QADL G P +RP  +E+T  GAA  AG A+ VW
Sbjct: 433 LRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVW 481


>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 279 GWTDTKNELSTQKNQIELLQFCRRD 205
           G+T T ++ S   N  E+L+FCRR+
Sbjct: 101 GFTSTSSDRSNSGNSSEMLRFCRRE 125


>04_04_1220 + 31843628-31844755
          Length = 375

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 427 GGGHCRRSRNACVAHDNTQPT 365
           GGGH R  R +CV  D+ +P+
Sbjct: 231 GGGHMRERRTSCVVVDDMEPS 251


>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
            190584-190862,190941-191013,191331-191379,192169-192433,
            192576-192631,192777-192845,193028-193139,193682-193771,
            193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 351  GXYRPVGWVLSWATHALRDLRQWPPP 428
            G   PVGW L + T  L D    PPP
Sbjct: 926  GNNNPVGWPLRFLTPVLSDENSVPPP 951


>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 363 PVGWV-LSWATHALRDLRQWPPP 428
           P  W+   W  H ++ ++ WPPP
Sbjct: 288 PATWLEFEWKQHDVQQIQPWPPP 310


>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -2

Query: 496 DADAG*FTGYTXHSSPHDGKYTXGGGHCRRSRNACVAHDNTQPTG 362
           DAD G     T HS P  G+   G G  RR R        T P G
Sbjct: 387 DADGGGGADSTGHSPPRSGR-KRGAGQQRRQRRRSPRPRVTAPDG 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,956,809
Number of Sequences: 37544
Number of extensions: 236691
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)