Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30991.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)                    57   1e-08
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)                   57   1e-08
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)               29   1.9  
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)                  28   5.8  

>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
          Length = 85

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = -3

Query: 546 PLRQLLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRA--MRVW 388
           PL  LL DGGM   + LMQ+QAD+ GI   RP M E+T  GAA+ AG A  + VW
Sbjct: 8   PLASLLVDGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
          Length = 137

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = -3

Query: 546 PLRQLLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRA--MRVW 388
           PL  LL DGGM   + LMQ+QAD+ GI   RP M E+T  GAA+ AG A  + VW
Sbjct: 8   PLASLLVDGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = -3

Query: 546 PLRQLLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRA--MRVW 388
           PL  LL DGGM   + LMQ+QAD+ GI   RP M E+T  GAA+ AG A  + VW
Sbjct: 419 PLASLLVDGGMTVNRLLMQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473


>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 546 PLRQLLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRAMRVW 388
           PL     DGG+    F+M++ + L G    RP   + +  GAA +AG A  VW
Sbjct: 4   PLCYHRTDGGVCNNDFVMELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 371  LGIVVGHTRIARPATMAAPXGVLSIMRGRMXGI 469
            +G+ + HTR+A  +   A  GVLSI R R+ G+
Sbjct: 1618 VGLSIHHTRLADVSIHHARLGVLSIHRSRLVGL 1650


>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
          Length = 516

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +1

Query: 382 RGPHTHCATCDNGRPXGCTFHHEGTNXWYTX*ISLHLHQKLSLRHPS 522
           R  H+H  T D  +P  C +  EG N  YT   SL  H KL    PS
Sbjct: 425 RKKHSHVHTSD--KPYNCKY--EGCNKSYTHPSSLRKHMKLHGMSPS 467


>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
          Length = 426

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 358 IGRXAGYCRGPHTHCATCDN 417
           +G+ A  CRGP T   TCDN
Sbjct: 174 LGQPALGCRGPKTERTTCDN 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,078
Number of Sequences: 59808
Number of extensions: 258918
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)