Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30991.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.10 
U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 534 LLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAG 406
           L  DGGM   +   ++QAD+ G   + P + E +  GAA+  G
Sbjct: 411 LKVDGGMIANKLFNEIQADIMGRDIVTPKITEISGWGAAVAGG 453


>U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical
           protein F53A9.5 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 443 WKVHPWGRPLSQVAQC 396
           W+  PW  P+S +AQC
Sbjct: 121 WRSTPWTLPISNIAQC 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,092
Number of Sequences: 27780
Number of extensions: 192656
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)