Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30991.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    52   3e-07
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib...    38   0.003
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    38   0.003
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99...    29   2.0  
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ...    28   4.7  
At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020...    28   4.7  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 24/49 (48%), Positives = 30/49 (61%)
 Frame = -3

Query: 534 LLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRAMRVW 388
           L  DGG      LMQ+QADL G P +RP+ +E+T  GAA  AG A+  W
Sbjct: 425 LRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFW 473


>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 451

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -3

Query: 534 LLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRAMRVWPT 382
           LLA GG+++    +Q  AD+ G P I P   ES   GAAI+   A + +P+
Sbjct: 348 LLACGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 398


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -3

Query: 534 LLADGGMAQTQFLMQMQADLXGIPXIRPLMMESTPXGAAIVAGRAMRVWPT 382
           LLA GG+++    +Q  AD+ G P I P   ES   GAAI+   A + +P+
Sbjct: 476 LLACGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPS 526


>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 489

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +3

Query: 381 SWATHALR-----DLRQWPPPXVYFPS*GDEXLVYPVNQPASASETEFAPSLRRRGVASR 545
           SWA+H        D   +PPP  Y P+        PV  P+ AS   + P   + G AS+
Sbjct: 17  SWASHQSYPQYGPDSYNYPPPPTYAPAPSPAPAPAPVPAPSPAS--SYGPQYSQEGYASQ 74


>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 397

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = -2

Query: 472 GYTXHSSPHDGKYTXGGGHCRRSRNACVAHDNTQPTGRXXPAGSYQ 335
           GY   S+  D  Y    GHC+        H   QPT    P    Q
Sbjct: 127 GYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQ 172


>At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096:
           60Kd inner membrane protein; similar to AtOXA1
           (GI:6624207) [Arabidopsis thaliana]
          Length = 525

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +1

Query: 448 EGTNXWYTX*ISLHLHQKLSLRHPSVGEEL 537
           +G+  ++    S+++ Q+LSL+HP+VG +L
Sbjct: 276 QGSLVYWVTNSSVNIFQQLSLKHPTVGAKL 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,964,276
Number of Sequences: 28952
Number of extensions: 172045
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)