Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30990.Seq
(399 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 142 2e-33
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 142 2e-33
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 122 3e-27
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 110 8e-24
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 110 1e-23
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 109 1e-23
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 98 6e-20
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 96 3e-19
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 93 1e-18
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 75 5e-13
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 71 1e-11
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 68 6e-11
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 68 8e-11
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 60 1e-08
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 49 4e-05
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 48 5e-05
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 48 7e-05
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 46 3e-04
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 42 0.003
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 41 0.008
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 41 0.010
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 38 0.096
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 37 0.13
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.17
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 36 0.22
UniRef50_Q1Q3S6 Cluster: Putative uncharacterized protein; n=1; ... 35 0.67
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 1.6
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 33 1.6
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 33 2.1
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 33 2.7
UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;... 33 2.7
UniRef50_O60706 Cluster: ATP-binding cassette transporter sub-fa... 33 2.7
UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;... 32 3.6
UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed C... 32 3.6
UniRef50_A0QJ72 Cluster: Acetolactate synthase large subunit; n=... 32 3.6
UniRef50_A0NEX7 Cluster: ENSANGP00000026998; n=1; Anopheles gamb... 32 4.8
UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2; ... 31 6.3
UniRef50_Q9ZIW4 Cluster: Orf4; n=4; Streptomyces|Rep: Orf4 - Str... 31 6.3
UniRef50_A4XD62 Cluster: Squalene/phytoene synthase; n=1; Salini... 31 6.3
UniRef50_A0ABV0 Cluster: Putative uncharacterized protein; n=2; ... 31 6.3
UniRef50_Q59N82 Cluster: Putative uncharacterized protein; n=1; ... 31 6.3
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 31 6.3
UniRef50_UPI0000585237 Cluster: PREDICTED: similar to cardioacce... 31 8.3
UniRef50_UPI000065DB2D Cluster: Probable histone-lysine N-methyl... 31 8.3
UniRef50_A7AKW9 Cluster: Putative uncharacterized protein; n=1; ... 31 8.3
UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2; ... 31 8.3
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 142 bits (345), Expect = 2e-33
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
D GNFSWGSEC TRK
Sbjct: 61 DVGNFSWGSECCTRK 75
Score = 94.7 bits (225), Expect = 6e-19
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 122
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 142 bits (345), Expect = 2e-33
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
D GNFSWGSEC TRK
Sbjct: 61 DVGNFSWGSECCTRK 75
Score = 94.7 bits (225), Expect = 6e-19
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 122
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 122 bits (294), Expect = 3e-27
Identities = 56/75 (74%), Positives = 63/75 (84%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
+TGNF+W SE RK
Sbjct: 61 ETGNFAWASEGVARK 75
Score = 95.5 bits (227), Expect = 3e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+TRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LPLG
Sbjct: 75 KTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLG 122
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 110 bits (265), Expect = 8e-24
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL
Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60
Query: 211 DTGNFSWGSECSTRK 255
++GNFSWGSE RK
Sbjct: 61 ESGNFSWGSEGIARK 75
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 110 bits (264), Expect = 1e-23
Identities = 53/76 (69%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 208 LDTGNFSWGSECSTRK 255
LDTGN+SWGSE TRK
Sbjct: 61 LDTGNYSWGSEAVTRK 76
Score = 79.8 bits (188), Expect = 2e-14
Identities = 35/48 (72%), Positives = 43/48 (89%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +G
Sbjct: 76 KTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIG 123
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 109 bits (263), Expect = 1e-23
Identities = 50/75 (66%), Positives = 60/75 (80%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRL
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
D+GNFSWGS+ TRK
Sbjct: 61 DSGNFSWGSQNVTRK 75
Score = 81.0 bits (191), Expect = 8e-15
Identities = 35/49 (71%), Positives = 44/49 (89%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGE 398
+TR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L LG+
Sbjct: 75 KTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGK 123
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 97.9 bits (233), Expect = 6e-20
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 192
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG T+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
Score = 94.7 bits (225), Expect = 6e-19
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 55 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 102
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 95.9 bits (228), Expect = 3e-19
Identities = 50/93 (53%), Positives = 61/93 (65%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGI R HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRL
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60
Query: 211 DTGNFSWGSECSTRKPVSLMLCIMHLTMNWCVQ 309
DTGNF+W SE + V L+ + + T N V+
Sbjct: 61 DTGNFAWASEAIAHR-VRLLDVVYNATSNELVR 92
Score = 74.1 bits (174), Expect = 9e-13
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 392
+ R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY + L
Sbjct: 75 RVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDL 121
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 93.5 bits (222), Expect = 1e-18
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGI+RD HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60
Query: 211 DTGNFSWGSECSTR 252
+ GNFSW S+ T+
Sbjct: 61 ENGNFSWASQSITK 74
Score = 58.0 bits (134), Expect = 6e-08
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 255 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 380
T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y
Sbjct: 76 TKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 74.9 bits (176), Expect = 5e-13
Identities = 33/48 (68%), Positives = 42/48 (87%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+TRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +G
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIG 220
Score = 73.3 bits (172), Expect = 2e-12
Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 252
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 253 KPVSLMLCIMHLTMN 297
K + +L ++++ N
Sbjct: 173 K--TRILDVVYIATN 185
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 70.5 bits (165), Expect = 1e-11
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGG 183
MGI+ D +KR TG + KKRKY LGR ANT+L Q+I ++R RGG
Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60
Query: 184 NTKYRALRLDTGNFSWGSECSTRKPVSLMLCIMHLTMNWCVQ 309
N K RALRL G+F+WGS + K ++ + + T N V+
Sbjct: 61 NIKRRALRLSHGSFAWGSADISHK-ARILQVVYNSTSNELVR 101
Score = 50.0 bits (114), Expect = 2e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 231 GIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 359
G + + RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 77 GSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 68.1 bits (159), Expect = 6e-11
Identities = 37/93 (39%), Positives = 53/93 (56%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGI+ HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRL
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 211 DTGNFSWGSECSTRKPVSLMLCIMHLTMNWCVQ 309
D G+F + + R L+ + H + N V+
Sbjct: 61 DMGHFKFITTGKFRM-AKLLQVVYHPSSNELVR 92
Score = 43.2 bits (97), Expect = 0.002
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +3
Query: 258 RIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 359
+++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 77 KLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 67.7 bits (158), Expect = 8e-11
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGI+R+ HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60
Query: 211 DTGNFSWGS 237
GNFS+ S
Sbjct: 61 SYGNFSFVS 69
Score = 37.9 bits (84), Expect = 0.072
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVD 344
+ +I+ V +N S+NELVRT TL K +IV +D
Sbjct: 75 KAKILSVAFNESSNELVRTNTLTKGSIVYLD 105
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 60.5 bits (140), Expect = 1e-08
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 240
R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 241 CSTRK 255
+TRK
Sbjct: 70 KTTRK 74
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 48.8 bits (111), Expect = 4e-05
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSW 231
K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQW 61
Score = 34.7 bits (76), Expect = 0.67
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 356
+ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 67 SKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 48.4 bits (110), Expect = 5e-05
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 240
R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 241 CSTRK 255
T+K
Sbjct: 69 GETKK 73
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 48.0 bits (109), Expect = 7e-05
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 237
++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 238 ECSTRK 255
E +K
Sbjct: 70 EKKIKK 75
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 46.0 bits (104), Expect = 3e-04
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +1
Query: 52 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTK 192
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK 54
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 42.3 bits (95), Expect = 0.003
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 240
R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N +
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 241 CSTRK 255
T+K
Sbjct: 69 GKTQK 73
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 41.1 bits (92), Expect = 0.008
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYR 198
++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVR 56
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 40.7 bits (91), Expect = 0.010
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGN 222
R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTAN 64
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 37.5 bits (83), Expect = 0.096
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 64 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS-WGSE 240
+ TGG+R P+R +RKYE+ R G Q + + RG TK +D N + G++
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLAVQGAK 71
Query: 241 CSTRKPVSLM 270
K V ++
Sbjct: 72 VKKSKIVKVL 81
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 37.1 bits (82), Expect = 0.13
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 58 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGN 222
+R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYAN 64
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 36.7 bits (81), Expect = 0.17
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 67 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 177
A G +RAP K YE R AA TRL P + ++R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 36.3 bits (80), Expect = 0.22
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +1
Query: 31 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKY 195
MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K
Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58
Query: 196 RALRL 210
+A ++
Sbjct: 59 KAKKV 63
>UniRef50_Q1Q3S6 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 374
Score = 34.7 bits (76), Expect = 0.67
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = -2
Query: 386 QRIMRLIPLPEWSCIYYNNCILDKGLCTHQFIVRCIIHNINDTGLRVEHSDPQEKLPVSR 207
+RI+R P+ CIY I C H ++ C+ +TGL+++ ++ + +PV
Sbjct: 284 KRILRF--QPKQLCIYLGTEIEVLKECDHNKVMECLGDLYAETGLKLQKNEREVNVPVPD 341
Query: 206 RSARYLVFPPRER 168
+ RY+ + ++
Sbjct: 342 NAYRYIFYMENQK 354
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 33.5 bits (73), Expect = 1.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 330 IVVVDATPFRQWYESHYTLPLGE 398
++ +D PFR+W + TLPLGE
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGE 44
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 33.5 bits (73), Expect = 1.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 201
R+ +G + + KR E GR A TR+G + + +RG TK RA
Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRA 56
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 33.1 bits (72), Expect = 2.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 321 KNAIVVVDATPFRQWYESHYTLPLG 395
K+AIV + PFRQW+E+ Y LG
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELG 25
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 32.7 bits (71), Expect = 2.7
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +2
Query: 44 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALS 154
G S GP G + PYA + S S G+PL TPGS LS
Sbjct: 595 GAVPSSSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 803
Score = 32.7 bits (71), Expect = 2.7
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 44 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTPFVHVVEILSTVR-CVWTPV 220
GI + GN Y G P GS L P + + STV+ WTP+
Sbjct: 488 GIRWTEDKKTFGNANQYVVEAGFLTGAPFNPDGSGLQNGDPLMGPLGQRSTVKDTAWTPM 547
Query: 221 TSLGDR 238
SL R
Sbjct: 548 ASLSYR 553
>UniRef50_O60706 Cluster: ATP-binding cassette transporter
sub-family C member 9; n=33; Euteleostomi|Rep:
ATP-binding cassette transporter sub-family C member 9 -
Homo sapiens (Human)
Length = 1549
Score = 32.7 bits (71), Expect = 2.7
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +1
Query: 37 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-------SVRSRGGNTKY 195
I D W TG P +K+ +P R P R H + R R T+
Sbjct: 614 IGDDSWR----TGESSLPFESCKKHTGVQPKTINRKQPGRYHLDSYEQSTRRLRPAETED 669
Query: 196 RALRLDTGNFSWGSECSTRKPVSLMLCIMHLTM 294
A+++ G FSWGS +T + + + LTM
Sbjct: 670 IAIKVTNGYFSWGSGLATLSNIDIRIPTGQLTM 702
>UniRef50_UPI0000F2CAD6 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 130
Score = 32.3 bits (70), Expect = 3.6
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = +1
Query: 40 SRDHWHK--RRATGGKRAPIRKKRKYELG--RPAANTRLGPQRIHSVRSRGGNTKYRALR 207
SR H H R GG P+ G R A RLG R+ R RGG + R R
Sbjct: 27 SRGHGHAPARPGGGGGGGPLHALAARVGGERRAARARRLG--RVGLPRGRGGGARARKER 84
Query: 208 LDTGNFSWGSECSTRKP 258
G + GS CS P
Sbjct: 85 ARAGRLAGGSRCSRGAP 101
>UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed
CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Deformed CG2189-PA - Apis mellifera
Length = 284
Score = 32.3 bits (70), Expect = 3.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 47 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTPFVHVVEILS 193
+TG+ EGPP G + GS+S P +P + L S P +H I S
Sbjct: 230 VTGMMEGPPGGGPLGHIASGSISPLAPATSPSATLQVSAP-IHPPPIKS 277
>UniRef50_A0QJ72 Cluster: Acetolactate synthase large subunit; n=2;
Mycobacterium avium|Rep: Acetolactate synthase large
subunit - Mycobacterium avium (strain 104)
Length = 569
Score = 32.3 bits (70), Expect = 3.6
Identities = 25/75 (33%), Positives = 30/75 (40%)
Frame = +2
Query: 26 LRWVLVGITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTPFVHVVEILSTVRC 205
L W L G GI P V GS + GVP SA PFV VV +
Sbjct: 433 LGWALGGAFGIKLARPHAPVVAICGDGSFNFGVPTAALWSAHRYGAPFVTVVLNNHSYLA 492
Query: 206 VWTPVTSLGDRNVQL 250
TPVT L + + +
Sbjct: 493 SKTPVTELYPQGISV 507
>UniRef50_A0NEX7 Cluster: ENSANGP00000026998; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000026998 - Anopheles gambiae
str. PEST
Length = 186
Score = 31.9 bits (69), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 338 YNNCILDKGLCTHQFIVRCIIHNINDTGLRVEHSD 234
++NC+L + +CT+ FI + ++ GL VE D
Sbjct: 110 HDNCLLQEYVCTNSFIGGAFCNRVDGAGLTVEDED 144
>UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2;
Actinomycetales|Rep: Putative phosphoglycerate mutase -
Nocardia farcinica
Length = 234
Score = 31.5 bits (68), Expect = 6.3
Identities = 21/50 (42%), Positives = 23/50 (46%)
Frame = +1
Query: 52 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 201
W RA +R R+ EL PAA RL PQ H R R G YRA
Sbjct: 102 WSPPRAVLDERLRDREMGVLELHPPAAIRRLAPQEAHR-RIRQGEWAYRA 150
>UniRef50_Q9ZIW4 Cluster: Orf4; n=4; Streptomyces|Rep: Orf4 -
Streptomyces coelicolor
Length = 310
Score = 31.5 bits (68), Expect = 6.3
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 29 RWVLVGITGISEGPPVGNVRPYAR-RGSMS*GVPLQTPGSALSES 160
R+V+V + G GPP G RP R GS S G P + P +A S S
Sbjct: 221 RYVVVAVAG---GPPAGPTRPRRRTAGSGSTGTPGRRPTTASSRS 262
>UniRef50_A4XD62 Cluster: Squalene/phytoene synthase; n=1;
Salinispora tropica CNB-440|Rep: Squalene/phytoene
synthase - Salinispora tropica CNB-440
Length = 312
Score = 31.5 bits (68), Expect = 6.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 19 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 135
D T+ G++RD RA G PIR+ +YE+ R A+
Sbjct: 189 DLTRFGVTRDDLLAARAAGRTSEPIRELIRYEVARAQAH 227
>UniRef50_A0ABV0 Cluster: Putative uncharacterized protein; n=2;
Streptomyces ambofaciens ATCC 23877|Rep: Putative
uncharacterized protein - Streptomyces ambofaciens ATCC
23877
Length = 434
Score = 31.5 bits (68), Expect = 6.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 5 EFSFLTQLRWVLVGITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTP 166
E + LT L W+ G+T ++EG P+ + + G Q PG + + P
Sbjct: 261 EVAGLTDLGWIAAGLTALAEGRPLPPPLDDPAQAWRTLGADPQVPGGTVGRAVP 314
>UniRef50_Q59N82 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 816
Score = 31.5 bits (68), Expect = 6.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVD 344
N T +YN SNNELV T ++V + ++V D
Sbjct: 182 NDTTVATSTIYNISNNELVDTLSIVSSNLIVDD 214
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 31.5 bits (68), Expect = 6.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYR 198
++ +GGK+ +RK +K L G P +LG V R RGGN K R
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVR 60
>UniRef50_UPI0000585237 Cluster: PREDICTED: similar to
cardioacceleratory peptide receptor; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
cardioacceleratory peptide receptor - Strongylocentrotus
purpuratus
Length = 416
Score = 31.1 bits (67), Expect = 8.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 37 ISRDHWHKRRATGGKRAP-IRKKRKYELGRPAANTRL 144
IS+ W K T GKR+ KK K EL R A++T L
Sbjct: 229 ISKKIWDKAHETSGKRSKRASKKNKIELNRNASSTTL 265
>UniRef50_UPI000065DB2D Cluster: Probable histone-lysine
N-methyltransferase ASH1L (EC 2.1.1.43) (ASH1- like
protein) (Absent small and homeotic disks protein 1
homolog) (huASH1).; n=1; Takifugu rubripes|Rep: Probable
histone-lysine N-methyltransferase ASH1L (EC 2.1.1.43)
(ASH1- like protein) (Absent small and homeotic disks
protein 1 homolog) (huASH1). - Takifugu rubripes
Length = 2057
Score = 31.1 bits (67), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 253 CELNIPIPKRSYRCPDAAHGT*YFHHVNE 167
C L+ P+P SYR P + H HHVN+
Sbjct: 925 CCLDAPVPHHSYRAPPSKHS---LHHVNK 950
>UniRef50_A7AKW9 Cluster: Putative uncharacterized protein; n=1;
Parabacteroides merdae ATCC 43184|Rep: Putative
uncharacterized protein - Parabacteroides merdae ATCC
43184
Length = 1014
Score = 31.1 bits (67), Expect = 8.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 222 LLLGIGMFNSQ-TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 356
LLLGIGM N+Q T++ V +A +NE + ++V + T F
Sbjct: 11 LLLGIGMANAQTTKVTGTVISAEDNEPIIGASIVVKGTTIGTVTDF 56
>UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2;
Geobacter lovleyi SZ|Rep: Putative uncharacterized
protein - Geobacter lovleyi SZ
Length = 321
Score = 31.1 bits (67), Expect = 8.3
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +3
Query: 69 HRWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAASGHR*LLLGIGMFN 248
HRW T H+Q E + + SA +RSF WK HR + IG N
Sbjct: 3 HRWPTSLHSQTEAIFHAVRSIREAKADSALGIRSFGSWKV---YKYEAHRFVEFMIG--N 57
Query: 249 SQTRIID 269
+T I+D
Sbjct: 58 GRTSILD 64
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,008,634
Number of Sequences: 1657284
Number of extensions: 9923309
Number of successful extensions: 27952
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 27114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27934
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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