Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30990.Seq
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 116 1e-27
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 116 1e-27
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 0.61
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 0.61
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 2.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 2.5
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.3
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 4.3
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 5.7
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 5.7
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 5.7
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 24 7.6
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 24 7.6
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 24 7.6
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 24 10.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 24 10.0
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 10.0
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 116 bits (280), Expect = 1e-27
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
D+GNFSWGSE ++K
Sbjct: 61 DSGNFSWGSEGVSKK 75
Score = 71.7 bits (168), Expect = 4e-14
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +3
Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+ +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G
Sbjct: 73 SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG 122
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 116 bits (280), Expect = 1e-27
Identities = 53/75 (70%), Positives = 62/75 (82%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
D+GNFSWGSE ++K
Sbjct: 61 DSGNFSWGSEGVSKK 75
Score = 71.7 bits (168), Expect = 4e-14
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +3
Query: 246 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+ +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G
Sbjct: 73 SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG 122
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.9 bits (59), Expect = 0.61
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 43 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 216
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 217 GNFSWGSECSTRKP 258
G+ E + KP
Sbjct: 1143 GDLMAVKEVALHKP 1156
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 0.61
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 46 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 207
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 2.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 19 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 135
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 367 YHCLNGVASTTTIAFLTRVFVRTNS 293
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -2
Query: 338 YNNCILDKGLCTHQFIVRCIIH-------NINDTGLRVEHSDPQEKLPVSRRSARYLVFP 180
+ N + + +H FI R +I+ +I D G ++ + ++ L + + Y+++P
Sbjct: 540 FENSLYHQSFSSHWFISRLLINPIRMLCWHITDVGKTLDLGEAEKLLKYNHKQCPYIIYP 599
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 394 PRGNV*CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAL 278
P ++ + +CL V + I+F T FVR N ++DAL
Sbjct: 544 PLASICSEDLNCLISVKNRL-ISFETHGFVRLNVVMDAL 581
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 46 DHWHKRRATGGKRAPIRKKRKYE 114
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 19 DP-TKMGISRDHWHKRRATGGKRAPIR 96
DP T + SR H H+ R+T K P R
Sbjct: 27 DPVTVLDRSRTHHHRGRSTSSKAQPFR 53
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 5.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 311 DPCQECNCCSRCNSIQAVV 367
D C++ CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 214 TGNFSWGSECST--RKPVSLMLCIMHLTMNWCVQ 309
+G+F W S C+ KPVSL + +T NW +
Sbjct: 282 SGDFPWKS-CTILKSKPVSLCVYPEKITFNWLTE 314
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 7.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 361 SGMSRIIRCLLG 396
SG+S +IRCLLG
Sbjct: 368 SGVSHVIRCLLG 379
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 323 LDKGLCTHQFI 291
L+KG CTHQF+
Sbjct: 92 LEKGECTHQFV 102
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 24.2 bits (50), Expect = 7.6
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 125 PLQTPGSALSESTP-FVHV----VEILSTVRCVWTPVTSLGDRNVQLANPYH 265
PL+ E++P FV V +E+L + V ++GDR +Q+ + YH
Sbjct: 123 PLEEEKLYAPENSPGFVEVLEGEIELLPNLPRTPIEVRNMGDRPIQVGSHYH 174
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 200 RCVWTPVTSLGDRNVQLANPYH 265
RC W LG N + NP H
Sbjct: 262 RCGWKEGQGLGQHNQGIINPLH 283
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -2
Query: 161 WIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 69
++R PS+++A ++ LF+R+ ++PP+
Sbjct: 327 FVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 81 FPTGGPSLMPVIPTNTHLSWVKKE 10
+PT L+ PT H SW +E
Sbjct: 190 YPTDSKQLVKYHPTEVHPSWTVEE 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,848
Number of Sequences: 5004
Number of extensions: 39251
Number of successful extensions: 116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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