Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30990.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 93 8e-20
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 36 0.012
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 0.60
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.60
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 1.1
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051) 28 2.4
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 27 4.3
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38) 27 5.6
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29) 26 9.8
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2) 26 9.8
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 26 9.8
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 26 9.8
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 93.1 bits (221), Expect = 8e-20
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = +1
Query: 88 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 255
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRK 59
Score = 90.2 bits (214), Expect = 5e-19
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
+ RIIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+G
Sbjct: 59 KARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIG 106
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 35.9 bits (79), Expect = 0.012
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 261 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 377
I+ V+++ +N E + +VK +IV VD PF W++ +
Sbjct: 75 ILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 148 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSE-CSTRKPVSLMLCIMHLTMN 297
P++I ++ GG+TK +ALR++ G ++ S+ P+ L +MH N
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPI---LSVMHSFAN 84
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.3 bits (65), Expect = 0.60
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Frame = -3
Query: 376 CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSMIRVCELNIPIPKRSYRCPDA 203
C Y C V +TT +A + ++++ S + A+ R C N
Sbjct: 700 CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759
Query: 202 AHGT*YFHHVNERSGFAEGRAWCLQRDALTHTSSSCVWAHVSHRWPFAY 56
HG + + A G+ WC + TH + C A + AY
Sbjct: 760 YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKCEIAQRFRKQTKAY 808
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 0.60
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 64 RATGGKRAPIRKKRKYELGRPAANTRLGP 150
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 7 VFFFDPTKMGISRDHWHKRRATG--GKRAPIRKKRKYELG 120
VF P+K S+ K+ ATG GK AP +KK+K+ G
Sbjct: 474 VFSDSPSKNKESKSTKRKKSATGGEGKEAPAKKKQKHNDG 513
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 22 PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 168
P +S D W K++ K+ I+KKR+ + A LG QR+ +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
Length = 387
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 272 NINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 159
++ D +RV+H + EK +S + F PR +T W
Sbjct: 114 SLRDFSIRVKHRNRMEKSTLSEFLETRVCFTPRRKTLW 151
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 125 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 250
P ++P L +TP VHVV + R V +TS+ +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 260 YH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 355
YH C C+ I Y DP EC CS+C+ +
Sbjct: 197 YHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 61 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 198
RR GG R+P + R+ R R P RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149
>SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 347 CIYYNNCILDKGLCTHQFIVRCIIHNINDTGL 252
C+Y N I + +CT FI IH D+ L
Sbjct: 237 CLYEENLIFEDPICTQMFIEGLQIHLFPDSML 268
>SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38)
Length = 523
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -3
Query: 376 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVCELNIPIPKRSYR 215
CD C NG++ ++ I + + R +S++ + T C ++ I KR Y+
Sbjct: 470 CDKKGCTNGLSCSSVIKRVVQTGCRVDSVIKKVVQTG----CRVDSVIKKRLYK 519
>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
Length = 309
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 350 SCIYYNNCILDKGLC 306
+C+ N CIL KGLC
Sbjct: 210 TCVDMNECILGKGLC 224
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 175 RGGNTKYRALRLDTGNFS 228
+GGN +YR + DTG FS
Sbjct: 1647 QGGNVEYRIVSPDTGKFS 1664
>SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)
Length = 118
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKR---KYELGRPAA 132
M +++ K++ GKRAP+R+K+ +Y R AA
Sbjct: 7 MELNQREGKKKKEAKGKRAPVRRKKPVQRYSTTRSAA 43
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 94 VWAHVSHRWPFAYASDPD 41
+W H S+RWPF ++ D
Sbjct: 461 IWHHGSYRWPFDVSASRD 478
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 258 RIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 359
+I D++ N N VR +TL+ NA +++D F+
Sbjct: 22 KIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 119 GVPLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGD 235
G+P+ AL ES+ + E+L V C TSL D
Sbjct: 93 GMPMDNTSVALDESSLGLLPTELLEEVSCFGDSQTSLSD 131
>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 255 TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 389
T I+DVV +N+ + VK + P + E+ YTLP
Sbjct: 675 TDIVDVVMAIANHPNAEVYSHVKIGAITCCVNPENVFMENRYTLP 719
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,620
Number of Sequences: 59808
Number of extensions: 318917
Number of successful extensions: 825
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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