Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30990.Seq
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 113 4e-26
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 27 6.5
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 27 6.5
U23510-2|AAC46787.1| 250|Caenorhabditis elegans Hypothetical pr... 27 6.5
U23510-1|AAN60495.1| 245|Caenorhabditis elegans Hypothetical pr... 27 6.5
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 27 6.5
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 27 6.5
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 27 6.5
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 27 6.5
Z70780-4|CAD54137.2| 786|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical pr... 26 8.7
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 26 8.7
U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone... 26 8.7
U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone... 26 8.7
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 26 8.7
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 26 8.7
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 26 8.7
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 26 8.7
AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear recep... 26 8.7
AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear recep... 26 8.7
AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear recep... 26 8.7
AF016416-1|AAB65275.1| 73|Caenorhabditis elegans Hypothetical ... 26 8.7
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 26 8.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 113 bits (272), Expect = 4e-26
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = +1
Query: 31 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 210
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 211 DTGNFSWGSECSTRK 255
D+GNFSW SE +TRK
Sbjct: 61 DSGNFSWASEQTTRK 75
Score = 85.0 bits (201), Expect = 2e-17
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = +3
Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 392
+TRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL
Sbjct: 75 KTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPL 121
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 34 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS-VRSRGGNTKYRALRL 210
G++R W + R+ R+P R++ + R R P+R +S RSR + + R+
Sbjct: 394 GMNRRSWSRSRSRSRSRSPPRRRSR---SRSRTRDRRRPRRSNSRRRSRSRDRQRRSRSR 450
Query: 211 DTGNFS 228
D +S
Sbjct: 451 DRRRYS 456
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 185 FPPRERTEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SRLIPILV 24
FP ++ W S V +GRPN +++G P A+ C S++I +++
Sbjct: 375 FPTQKEAAW---AISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVL 425
>U23510-2|AAC46787.1| 250|Caenorhabditis elegans Hypothetical
protein R12C12.9a protein.
Length = 250
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 167 FVHVVEILSTVRCVWTPVTSLGDRNVQLANPYH*CCV 277
F+ V+ + + C++ + D N + NP H C V
Sbjct: 82 FLWVISAIGVILCIFVMIPQFFDFNDKKGNPSHLCLV 118
>U23510-1|AAN60495.1| 245|Caenorhabditis elegans Hypothetical
protein R12C12.9b protein.
Length = 245
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 167 FVHVVEILSTVRCVWTPVTSLGDRNVQLANPYH*CCV 277
F+ V+ + + C++ + D N + NP H C V
Sbjct: 82 FLWVISAIGVILCIFVMIPQFFDFNDKKGNPSHLCLV 118
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = +1
Query: 22 PTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTR 141
P + G D W R+ G P++K A NT+
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +1
Query: 43 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 192
R+ G +R+P R +R+ + P N + P+R + RS ++
Sbjct: 55 RERMENLTLEGKRRSPPRVRREPPMRSPGRNEVMSPERRYGTRSASSRSQ 104
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 101 RGSMS*GVPLQTPGSALSESTPFVHVVEILSTVRCVWTP-VTSLGDRNVQLANP 259
+G+ + GV + TPG+ + +TP V + T TP VT ++LA+P
Sbjct: 650 QGTGATGVTMSTPGTMATGTTPMTPTVSVWGTN----TPAVTPASPTTIRLADP 699
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 185 FPPRERTEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SRLIPILV 24
FP ++ W S V +GRPN +++G P A+ C S++I +++
Sbjct: 375 FPTQKEAAW---AISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVL 425
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 185 FPPRERTEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SRLIPILV 24
FP ++ W S V +GRPN +++G P A+ C S++I +++
Sbjct: 284 FPTQKEAAW---AISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVL 334
>Z70780-4|CAD54137.2| 786|Caenorhabditis elegans Hypothetical
protein F46B6.5b protein.
Length = 786
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 263 DTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 159
DT + H D QEK+ SRRSA P E+
Sbjct: 660 DTTYQQFHDDLQEKISKSRRSANLPSLSPANSEEY 694
>Z70780-3|CAA94828.2| 828|Caenorhabditis elegans Hypothetical
protein F46B6.5a protein.
Length = 828
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 263 DTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 159
DT + H D QEK+ SRRSA P E+
Sbjct: 702 DTTYQQFHDDLQEKISKSRRSANLPSLSPANSEEY 736
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRK 255
A+++D G+F+WGS+ RK
Sbjct: 613 AIKMDGGSFAWGSKEEDRK 631
>U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform c protein.
Length = 544
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 353 WSCIYYNNCILDK---GLCTHQFIVRCIIHNINDTGLRVEHSDP-QEKLP 216
++C + NNCI+DK C + RCI ++ +R + ++K+P
Sbjct: 77 YACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVP 126
>U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform a protein.
Length = 583
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 353 WSCIYYNNCILDK---GLCTHQFIVRCIIHNINDTGLRVEHSDP-QEKLP 216
++C + NNCI+DK C + RCI ++ +R + ++K+P
Sbjct: 116 YACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVP 165
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRK 255
A+++D G+F+WGS+ RK
Sbjct: 613 AIKMDGGSFAWGSKEEDRK 631
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRK 255
A+++D G+F+WGS+ RK
Sbjct: 613 AIKMDGGSFAWGSKEEDRK 631
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRK 255
A+++D G+F+WGS+ RK
Sbjct: 613 AIKMDGGSFAWGSKEEDRK 631
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRK 255
A+++D G+F+WGS+ RK
Sbjct: 613 AIKMDGGSFAWGSKEEDRK 631
>AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 565
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 353 WSCIYYNNCILDK---GLCTHQFIVRCIIHNINDTGLRVEHSDP-QEKLP 216
++C + NNCI+DK C + RCI ++ +R + ++K+P
Sbjct: 98 YACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVP 147
>AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 595
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 353 WSCIYYNNCILDK---GLCTHQFIVRCIIHNINDTGLRVEHSDP-QEKLP 216
++C + NNCI+DK C + RCI ++ +R + ++K+P
Sbjct: 128 YACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVP 177
>AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 583
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 353 WSCIYYNNCILDK---GLCTHQFIVRCIIHNINDTGLRVEHSDP-QEKLP 216
++C + NNCI+DK C + RCI ++ +R + ++K+P
Sbjct: 116 YACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVP 165
>AF016416-1|AAB65275.1| 73|Caenorhabditis elegans Hypothetical
protein F29A7.5 protein.
Length = 73
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 114 VRASRCKHQARPSANPLRSFT--WWKY*VPCAASGH 215
+ +RC+ NPL+ + +W+Y P AA GH
Sbjct: 24 ISRNRCRVTGVKVPNPLKKVSNFFWRYRAPQAAPGH 59
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 199 ALRLDTGNFSWGSECSTRK 255
A+++D G+F+WGS+ RK
Sbjct: 613 AIKMDGGSFAWGSKEEDRK 631
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,476,063
Number of Sequences: 27780
Number of extensions: 233920
Number of successful extensions: 702
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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