Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30990.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   109   5e-25
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   109   7e-25
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    31   0.28 
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    30   0.65 
At5g44010.1 68418.m05386 expressed protein                             29   0.86 
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof...    28   2.6  
At3g46650.1 68416.m05064 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.6  
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   4.6  
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    26   8.0  
At2g21650.1 68415.m02575 myb family transcription factor contain...    26   8.0  
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa...    26   8.0  

>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  109 bits (263), Expect = 5e-25
 Identities = 53/76 (69%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 208 LDTGNFSWGSECSTRK 255
           LDTGNFSWGSE  TRK
Sbjct: 61  LDTGNFSWGSEAVTRK 76



 Score = 72.5 bits (170), Expect = 9e-14
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
           +TRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +G
Sbjct: 76  KTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIG 123


>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  109 bits (262), Expect = 7e-25
 Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 207
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 208 LDTGNFSWGSECSTRK 255
           LDTGN+SWGSE +TRK
Sbjct: 61  LDTGNYSWGSEATTRK 76



 Score = 83.0 bits (196), Expect = 7e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = +3

Query: 252 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 395
           +TR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LG
Sbjct: 76  KTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELG 123


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 376 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVCELNIPIP 230
           C  Y  L GV S+  +A L+ +  R  SL+   +  ++  VC L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 10  FFFDPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 156
           F  DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 206 FAMDPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


>At5g44010.1 68418.m05386 expressed protein 
          Length = 357

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 326 ILDKGLCTHQFIVRCIIHNINDTGLRV--EHSDPQEKLPVSRRSARYL 189
           I+D  LC  Q +V C+  +  +TGL++  +H +P+E L      A +L
Sbjct: 98  IIDGKLCKRQSVVSCV--SALETGLKILSKHIEPKESLHREDNDATFL 143


>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 735

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 332 NCILDKGLCTHQFIVRCIIHNINDTGL-RVEHSDPQEKLP 216
           N I  KG+C      RCI++ I+D  +  +E+  P+  +P
Sbjct: 530 NMIWWKGMCEMDISSRCIVNEISDEEVHEIENEVPETAVP 569


>At3g46650.1 68416.m05064 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 438

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -2

Query: 350 SCIYYNNCILDKGLCTHQFIVRCIIHNINDTGLRVEHSDPQEKLPVSRRSARYLVFP 180
           +CI Y+  +   G    +F +  +I +       V H D Q+K+  +    RY   P
Sbjct: 109 ACIIYDEYMYFCGAAAKEFSIPSVIFSTQSAANYVSHPDMQDKVVENLYPLRYKDLP 165


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 85  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 186
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/56 (19%), Positives = 29/56 (51%)
 Frame = -2

Query: 362 LPEWSCIYYNNCILDKGLCTHQFIVRCIIHNINDTGLRVEHSDPQEKLPVSRRSAR 195
           +PE + + +NN I    L  +     C+++++ D+G+ ++       + +S + A+
Sbjct: 285 MPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAK 340


>At2g21650.1 68415.m02575 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA-binding domain
          Length = 101

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 46  DHWHK-RRATGGKRAPIRKKRKYEL 117
           D WH   RA GGK  P   KR+Y+L
Sbjct: 35  DRWHNVARAVGGK-TPEEAKRQYDL 58


>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 343

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 272 CV*CI*Q*IGAYKDPCQECNCCSRCNS 352
           CV C+ Q   A   PC    CC+ C+S
Sbjct: 296 CVICLEQEYNAVFVPCGHMCCCTACSS 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,914,234
Number of Sequences: 28952
Number of extensions: 216750
Number of successful extensions: 568
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)