Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30989.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.0  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   4.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   4.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 312 KIDFFNFNVCRVNCKRIASPTP 247
           +IDF N     V C    +PTP
Sbjct: 32  RIDFSNTTGAVVECSAHGNPTP 53


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 433 VPSYLFSKDLGRPSLWPSYQ 374
           VP Y F K   + SLW   Q
Sbjct: 27  VPPYSFEKPDSQKSLWKKIQ 46


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 433 VPSYLFSKDLGRPSLWPSYQ 374
           VP Y F K   + SLW   Q
Sbjct: 27  VPPYSFEKPDSQKSLWKKIQ 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,232
Number of Sequences: 336
Number of extensions: 1689
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)