Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30989.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    33   0.027
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.4  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 32.7 bits (71), Expect = 0.027
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +1

Query: 262 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVL 363
           +PL +    + +++++  PEF+  ++P++DW  L
Sbjct: 23  FPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNAL 56


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 447 FKNSPFHHTYFLKILADHHCGRAISGHP*YFP 352
           F++  F +TYF K   DH C    S H   FP
Sbjct: 150 FEDDYFKNTYFDKTHIDHKCKEHCSCHHDKFP 181


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 310 FNPEFISRVIPKLDWEVL 363
           F  +FI  V+ +++WE+L
Sbjct: 100 FQEQFIENVVKEINWEIL 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,232
Number of Sequences: 5004
Number of extensions: 27614
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)