Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30989.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  

>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 435  PFHHTYFLKILADHHCGRAISGHP*YFPIQLWYY 334
            P H+TY + +L  H+  R +S +P   PI   YY
Sbjct: 1171 PVHYTYLVIVLPVHYTNR-VSHYPCIIPIASSYY 1203


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 435 PFHHTYFLKILADHHCGRAISGHP*YFPIQLWYY 334
           P H+TY + +L  H+  R +S +P   PI   YY
Sbjct: 142 PVHYTYLVIVLPVHYTNR-VSHYPCIIPIASSYY 174


>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 274 INATDIKVKEVDFN-PEFISRVIPKLDWEVLWVAADS 381
           +  T  ++ +++FN P F S VI  L W + W   D+
Sbjct: 73  VRYTSQRIMKMNFNHPGFTSIVISMLHWRLFWPGKDT 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,665
Number of Sequences: 59808
Number of extensions: 182504
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)