Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30989.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    30   0.68 
AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical ...    28   2.7  

>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 256  TGYPLAINATDIKV-KEVDFNPEFISRVIPKLDWEVLWVAADS 381
            T Y L +    +K+ +E+D NP    ++ PK+D   L++AADS
Sbjct: 1159 TEYLLLLAEVKVKLFEEIDVNPRVREQLRPKIDLIDLYMAADS 1201


>AL032652-8|CAA21706.1|  277|Caenorhabditis elegans Hypothetical
           protein Y63D3A.10 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +1

Query: 313 NPEFISRVIPKLDWEVLWV---AADSSATVMVCQDL 411
           NP+ + ++I KLD +VLW+    +++S T+ V +++
Sbjct: 128 NPQNLLKIIGKLDLKVLWIFFNFSENSTTISVYREI 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,814,405
Number of Sequences: 27780
Number of extensions: 149471
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)