Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30989.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22270.1 68414.m02783 expressed protein contains Pfam domain ...    45   3e-05
At1g78190.1 68414.m09111 expressed protein                             44   4e-05
At4g27700.1 68417.m03982 rhodanese-like domain-containing protei...    27   4.4  
At5g52410.2 68418.m06502 expressed protein                             27   5.9  
At5g52410.1 68418.m06503 expressed protein                             27   5.9  
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put...    27   5.9  
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    27   7.7  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    27   7.7  
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea...    27   7.7  

>At1g22270.1 68414.m02783 expressed protein contains Pfam domain
           PF03966: Protein of unknown function (DUF343)
          Length = 124

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +1

Query: 256 TGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADS 381
           +G+PL I A ++  KEVDFNP+FI  +  K++W+ L   A S
Sbjct: 18  SGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARS 59


>At1g78190.1 68414.m09111 expressed protein
          Length = 124

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 262 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVL 363
           +PL I A  + VKEVDFNP+F+  +  K+DW+ L
Sbjct: 20  FPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKAL 53


>At4g27700.1 68417.m03982 rhodanese-like domain-containing protein
           contains rhodanese-like domain PF00581
          Length = 224

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +1

Query: 313 NPEFISRVIPKLDWEVLWVAADSSATVM 396
           NPEFI  V  KLD E   + A SSA  M
Sbjct: 145 NPEFIQSVEAKLDKEAKIIVACSSAGTM 172


>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 407 SWQTITVAELSAATHNTSQSSFGITRLIN-SGLKSTSLTLMSVAL 276
           +W  + +A+LSA  H  +  SFG TRL   S   + + T +S+A+
Sbjct: 398 AWPAL-IADLSAGEHGITALSFGRTRLFQPSKAVTKAQTAVSLAI 441


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 407 SWQTITVAELSAATHNTSQSSFGITRLIN-SGLKSTSLTLMSVAL 276
           +W  + +A+LSA  H  +  SFG TRL   S   + + T +S+A+
Sbjct: 147 AWPAL-IADLSAGEHGITALSFGRTRLFQPSKAVTKAQTAVSLAI 190


>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 393 HCGRAISGHP*YFPIQLWYYTTNKFRIKIDFFNFNV 286
           H   A++G P Y   +  YY TN+   K D ++F +
Sbjct: 730 HVSTAVAGTPGYLDPE--YYRTNRLNEKSDVYSFGI 763


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 274 INATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSSA 387
           I+  +  +  ++  PE I + +PK++W+ L +   S+A
Sbjct: 176 IDTINESIGNLEITPEMIRQFLPKINWDSLDIKDRSAA 213


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 274 INATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSSA 387
           I+  +  +  ++  PE I + +PK++W+ L +   S+A
Sbjct: 389 IDTINESIGNLEITPEMIRQFLPKINWDSLDIKDRSAA 426


>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 5
           (SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
           identical to that of GB:AJ224957. This gene appears to
           be a truncated version of that in GB:AJ224957; contains
           4 WD-40 repeats (PF00400)
          Length = 392

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 6/28 (21%), Positives = 19/28 (67%)
 Frame = +1

Query: 301 EVDFNPEFISRVIPKLDWEVLWVAADSS 384
           + +F  +++ +++PK+DW  + V+  ++
Sbjct: 36  QTNFGSDYVFQIVPKIDWTAIAVSLSTN 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,199,403
Number of Sequences: 28952
Number of extensions: 136706
Number of successful extensions: 289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)