Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30987.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 7e-14
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 5e-10
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 53 1e-07
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 46 2e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 42 3e-04
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 42 3e-04
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.001
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.002
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 38 0.007
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 37 0.012
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.017
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.022
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 35 0.050
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.050
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.088
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.15
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.15
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.20
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.36
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 31 0.62
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 31 0.82
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.82
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 1.4
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 29 1.9
SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8) 29 1.9
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 1.9
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 29 2.5
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 29 2.5
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 29 3.3
SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 28 4.4
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 28 4.4
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 5.8
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 5.8
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16) 28 5.8
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 7.6
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39) 27 7.6
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 27 7.6
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 7.6
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 101 bits (243), Expect = 3e-22
Identities = 50/82 (60%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 433
A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G LSFWRGN AN
Sbjct: 20 AIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLAN 79
Query: 434 VIRYFPTQALNFAFKDKYKQVF 499
IRYFPTQALNFAFKD+ K +F
Sbjct: 80 CIRYFPTQALNFAFKDQVKALF 101
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 350 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 502
+YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/78 (43%), Positives = 56/78 (71%)
Frame = +2
Query: 260 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 439
AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN NVI
Sbjct: 46 AVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVI 99
Query: 440 RYFPTQALNFAFKDKYKQ 493
R FP A+ FA ++YK+
Sbjct: 100 RIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 61.3 bits (142), Expect = 5e-10
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WRGN ANV
Sbjct: 147 AGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANV 200
Query: 437 IRYFPTQALNFAFKDKYKQV 496
I+ P + F +K K++
Sbjct: 201 IKIAPESGIKFFAYEKAKKL 220
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/79 (25%), Positives = 43/79 (54%)
Frame = +2
Query: 266 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 445
S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+RG F +++
Sbjct: 244 SQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYRGLFPSLLGI 296
Query: 446 FPTQALNFAFKDKYKQVFL 502
P ++ A + K +L
Sbjct: 297 IPYAGIDLAVYETLKNFYL 315
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 418
A +SKTA APIERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 21 AIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
A ++++ +P+E VK+L QV + G++ F + K +G+ +FW+GN +
Sbjct: 69 AVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKREGIKAFWKGNGVSC 121
Query: 437 IRYFPTQALNFA 472
IR FP A+ +A
Sbjct: 122 IRLFPYSAVQYA 133
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 263 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G + +
Sbjct: 165 IAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPSFLG 221
Query: 443 YFP 451
FP
Sbjct: 222 LFP 224
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 260 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 439
A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG ++
Sbjct: 925 ATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
Query: 440 RYFPTQALNFAFKDKYKQVF 499
P +A+ D + +F
Sbjct: 983 GVSPEKAIKLTTNDFVRGIF 1002
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +2
Query: 278 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 457
+AP++ VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R P
Sbjct: 51 IAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGF 109
Query: 458 ALNF 469
A+ F
Sbjct: 110 AVYF 113
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 350 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 469
RYKG++D ++ KE+G++ F RG + ++R F Q L F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +2
Query: 350 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 493
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +2
Query: 335 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 499
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 263 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 421
++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 434 IAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 353 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 502
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
Score = 36.3 bits (80), Expect = 0.017
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 275 AVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 454
A P++ K +Q + I YKG +D RI + +G+ + W+G R P
Sbjct: 110 ASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPH 166
Query: 455 QALNFAFKDKYKQV---FLGG 508
L F F ++ + F GG
Sbjct: 167 TVLTFIFLEQLNRAANYFYGG 187
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 362 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 496
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 281 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 421
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 365 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 490
+DA ++IP+ +GL S WRG ++ P + F D+ K
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK 105
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 263 VSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 421
+SK + P + +K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 42 ISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 284 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 463
PI+ K +QVQ + Q A +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 464 NFAFKDKYKQV 496
F F + K +
Sbjct: 281 FFGFYEFTKNL 291
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 34.7 bits (76), Expect = 0.050
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGIVDAFVRIPKEQGLLS 409
A++++ A PI+ K+ LQ+Q S +A+ D Y+G++ V + K +G+ +
Sbjct: 25 ASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEGMKT 84
Query: 410 FWRGNFANVIRYFPTQALNFAFKDKYKQVF 499
++G + R ++ D+ K ++
Sbjct: 85 MYKGLIPGIHRQLCFASIRIGLYDQVKAMY 114
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.088
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 383 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 496
+P+E L W G F++VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 284 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 460
P++ VK Q + +Y G D +I G+ +F +G A ++R FPT A
Sbjct: 377 PVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATILRGFPTNA 435
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 239 PGWRYPAAVSKTAVA-----PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 403
P WR+ + + VA P++ V+ L VQ +S + ++ Y GIV A RI E+G+
Sbjct: 28 PLWRFVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGI 85
Query: 404 LSFWRGNFANVIRYFP 451
++G +++ P
Sbjct: 86 RGLYKGLVPSLVSIAP 101
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/91 (25%), Positives = 34/91 (37%)
Frame = +2
Query: 263 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
+ P + VK+ Q + + I YK + AF +I K++G L W G V R
Sbjct: 127 IGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTGMKPTVKR 182
Query: 443 YFPTQALNFAFKDKYKQVFLGGLTRRRILAL 535
D K + L R +AL
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREGVAL 213
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +2
Query: 143 AATPTSTYSPSEDHI--IEQNVEPRRSGRVR*GLPGWRYPAAVSKTAVAPIERVKLLLQV 316
AA + T P+ DH + N E R G V L V+ +P++ V+
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREG-VALHLASALVAGFVATCVASPVDIVRTRFMT 241
Query: 317 QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
Q + Y+G +D + + +G+L+ ++G F N R
Sbjct: 242 QPKDTK-GRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTR 282
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 383 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 496
+P+E +L W G ++VI F A+N F+D+YK++
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 284 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 463
P++ +K+ LQ + K +KG +D F++ + +GL ++G + ++ P+ AL
Sbjct: 40 PLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLRGLYKGMLSPLLMATPSTAL 98
Query: 464 NF 469
F
Sbjct: 99 TF 100
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 266 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 445
+ AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G +I
Sbjct: 219 ASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVI 275
Query: 446 FP 451
P
Sbjct: 276 AP 277
>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 30.7 bits (66), Expect = 0.82
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = +1
Query: 190 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRR 369
RT+ R + R R + V+ RR DRR T A T R+Q DRRR + RR
Sbjct: 100 RTRARVTIRRQVDRRRTRARVTSRRQVDRRRTR------AQVTRRRQVDRRRTRARVTRR 153
Query: 370 R 372
R
Sbjct: 154 R 154
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 190 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRAC---------QAAAPSTARQQADRR 342
RT+ R + R R + V+ RR DRR T + A T+R+Q DRR
Sbjct: 70 RTRARVTSRRQVDRRRTRARVTSRRQVDRRRTRARVTIRRQVDRRRTRARVTSRRQVDRR 129
Query: 343 RPALQGYRRR 372
R Q RRR
Sbjct: 130 RTRAQVTRRR 139
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 190 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRR 345
RT+ R + R R + V+ RR DRR T A T+R+Q DRRR
Sbjct: 55 RTRARVTSRRQVDRRRTRARVTSRRQVDRRRTR------ARVTSRRQVDRRR 100
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 190 RTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRR 369
RT+ + + R R + V+ RR DRR T A T+R+Q DRRR + R
Sbjct: 40 RTRAQVTSRRQVDQRRTRARVTSRRQVDRRRTR------ARVTSRRQVDRRRTRARVTSR 93
Query: 370 R 372
R
Sbjct: 94 R 94
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 266 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 424
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 278 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 451
+ P++RVK +LQ++ + Y G VD RI +E G+ ++G +R P
Sbjct: 155 LTPLDRVKCILQIE----KAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVTAMRDIP 208
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 284 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 463
P++ +K+ LQ + K YK D F +I + +G+ +RG ++ P +
Sbjct: 58 PLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPNTTV 116
Query: 464 NFA 472
F+
Sbjct: 117 LFS 119
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 278 VAPIERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 451
+ P E +K LQ QH + I+ K G++D ++I + G +RG A R P
Sbjct: 124 LCPAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVP 182
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 359 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 496
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 304 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 405
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 304 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 405
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 AVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 454
A+ PIE +K LQ+ Y+G++ + KE+G+ +F+R + P
Sbjct: 14 AMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPF 65
Query: 455 QALNFAFKDKYKQVF--LGG 508
Q L+F + ++ LGG
Sbjct: 66 QTLHFTVYEYARKALNPLGG 85
>SB_30412| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
Length = 492
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +1
Query: 256 RRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLRAHPQGAGSPFILAW*LRQR 435
++ LQ + HR + A+Q+ R+ LQG R R + +G+ W R+R
Sbjct: 267 QKELQGKGGRHRGNGEGSVVNAQQEWKERQKELQGKGGRHRGNGEGSALNVQQEW--RER 324
Query: 436 HQVLPDPGAQLRLQGQVQA 492
+ L G + R G+ A
Sbjct: 325 QKELQGKGGRHRGNGEGSA 343
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 256 RRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLRAHPQGAGSPFILAW*LRQR 435
++ LQ + HR + A+Q+ R+ LQG R R + +G+ W R+R
Sbjct: 354 QKELQGKGGRHRGNGEGSVVNAQQEWRERQKELQGKGGRHRGNGEGSAVNAQQEW--RER 411
Query: 436 HQVLPDPGAQLRLQGQVQA 492
+ L G + R +G+ A
Sbjct: 412 QKELQGKGGRHRGKGEGSA 430
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 256 RRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLRAHPQGAGSPFILAW*LRQR 435
++ LQ + HR + A+Q+ R+ LQG R R +G+ W R+R
Sbjct: 383 QKELQGKGGRHRGNGEGSAVNAQQEWRERQKELQGKGGRHRGKGEGSAVNVQQEW--RER 440
Query: 436 HQVLPDPGAQLRLQGQ 483
+ L G + R G+
Sbjct: 441 QKELQGKGGRHRGNGE 456
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 256 RRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLRAHPQGAGSPFILAW*LRQR 435
++ LQ + HR + A+Q+ R+ LQG R R + +G+ W ++R
Sbjct: 209 QKELQGKGGRHRGNGEGSVVNAQQEWKERQKELQGKGGRHRGNGEGSAVNAQQEW--KER 266
Query: 436 HQVLPDPGAQLRLQGQ 483
+ L G + R G+
Sbjct: 267 QKELQGKGGRHRGNGE 282
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 304 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 405
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 304 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 405
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 253 IPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 125
+PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 540 LPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 383 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGLTRR 520
+P+E +L + G ++VI F A+N FK++YK++ T R
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKILRPRCTGR 312
>SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 239 PGWRYPAAVSKTAVAPIERVK 301
P W P+++++ AVAPI RV+
Sbjct: 221 PNWAPPSSITRPAVAPITRVR 241
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 386 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 502
P+E L W G ++VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 284 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 463
P E VK LQ+ + AA Y+G +D + K G+L +RG + + P ++
Sbjct: 60 PTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASV 115
Query: 464 NFAFKDKYKQVFL---GGLTRRRILA 532
FA + K G LT+ + LA
Sbjct: 116 RFAVFEYLKNKMADENGKLTQFQTLA 141
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 383 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 499
+P+E L + G ++VI F A+N F+++YK+VF
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVF 301
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 304 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 405
A+ S RQQ R RP +GY +R R +P+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 253 IPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 125
+PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1267 LPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 125 DPPSACAATPTSTYSPSEDHIIEQNVEPRRSGRVR*GLPGWRYPAAVSKTAVAPIERVKL 304
D PS P YS ++ + E +RS R + + P S VAP+E V
Sbjct: 493 DAPSESVPLPQHQYSLPDERL-RPFTEDQRSSNAR--IARMQDPNTSSGVPVAPVEEVYP 549
Query: 305 LLQVQHVSKQ 334
+H+S Q
Sbjct: 550 AHDAKHISSQ 559
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 178 RSHNRTKCRTSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQ 357
+ ++R++ R+S R RS S R R + R HR + +PS R R +
Sbjct: 318 KKYSRSRSRSSERRRRSRSRSTEHRYRSRSRSPRRKHRRSTSTSPSR------RYRSGKK 371
Query: 358 GYRRRLRA 381
G++RR R+
Sbjct: 372 GHKRRSRS 379
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.9 bits (59), Expect = 5.8
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +2
Query: 110 ELVFRDPPSA----CAATPTSTYSPSEDHIIEQNVEPRRSGRVR*GLPGWRYPAAVSK-T 274
E + RDP + A+P S I EQNVE S + G+ G PA K T
Sbjct: 269 EALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVESSPIEAGVDG-ETPAPDEKST 327
Query: 275 AVAPIERVKLLLQVQHVSK-QIA 340
VAPI V LQ + ++ QIA
Sbjct: 328 DVAPISEVADALQEKEENEPQIA 350
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +2
Query: 32 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 175
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
Length = 494
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 232 RTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPAL 354
+T+ +AV L RRS +A P+T R+ + RP L
Sbjct: 337 KTAKIAVKTNNLLRRRSVAVTAPSAKPNTTRRMSTASRPTL 377
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -3
Query: 540 RSNARMRLLVKPPRNTCLYLSLKAKLSAWVGKYLMTLAKLPRQNERRPCSLGMRTKASTI 361
RS AR KP C Y K+ S ++L + LP + ER +RT TI
Sbjct: 27 RSRARRNHGWKPSLKGCNYHLAKSTFSIRNVEFLFAVRTLPTREERITADSKLRTSFETI 86
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 80 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 190
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
Length = 1037
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 205 TSPIRSRSLRTSWLAVSRRRLQDRRSTHRACQAAAPSTARQQADRRRPALQGYRRRLR 378
TSP+ SRS + ++ ++R ++ R C AAA + ++A AL R RLR
Sbjct: 778 TSPLTSRSRKALGKVEPNQQSEERGASCRRCAAAAGNPGAERA-AAGTALARRRCRLR 834
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 427 RQRHQVLPDPGAQLRLQGQVQAGVPRRLDKKTHSGVTS 540
RQ H P PG++ R + Q+Q +PR L K + + TS
Sbjct: 256 RQEHPPPPPPGSRGRAKTQLQL-IPRSLQKTSSTPHTS 292
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 27.5 bits (58), Expect = 7.6
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +1
Query: 178 RSHNRTKCRTSPIRSRSLRTSWLAVSRRRLQDR-RSTHRACQAAAPSTARQQADR--RRP 348
RSH RT C R+RS+ W+ V R Q + R ++ Q A A+ A R RRP
Sbjct: 3308 RSHRRTVC-----RARSI--GWIKVRRAISQGKFREYIKSEQTQAIKMAKFVARRSNRRP 3360
Query: 349 ALQ----GYRRRLRAHPQGAGSPFILAW*LRQR 435
+ G+R+ RA QG ++ + +RQR
Sbjct: 3361 VCKARSVGWRKVRRAIDQGNFREYMRSEHIRQR 3393
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 59 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 181
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,776
Number of Sequences: 59808
Number of extensions: 368734
Number of successful extensions: 1128
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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