Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30986.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    31   0.005
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    30   0.012
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   5.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.1  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 31.5 bits (68), Expect = 0.005
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 394 PSRLMLPKGTYDGFPFQLFVFVYPY 320
           P  ++LPKGT  G+P  LFV +  Y
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNY 606


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 30.3 bits (65), Expect = 0.012
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 394 PSRLMLPKGTYDGFPFQLFVFVYPYE 317
           P  +++PKGT +G   QLFV +  Y+
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYD 608


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 280 VPDNKPFGYHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 101
           +PD K  G HS+    L TS +   S ++  S        +YL   T  + + + + L+ 
Sbjct: 215 MPDIKKKGLHSLPRLVLFTSEDAHYSIKKLASFQGIGTDNVYL-IRTDARGRMDVSHLVE 273

Query: 100 KSKRTL 83
           + +R+L
Sbjct: 274 EIERSL 279


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 209 MFFKKVLVYHEGELFPYLFNI 147
           ++F +++VY    + P L+N+
Sbjct: 333 LYFCRIMVYLNSAINPILYNL 353


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 232 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNA 110
           L   N +T     SW+ +    SP+Y + L     + N NA
Sbjct: 193 LDVINVMTYDFHGSWAGVTAQNSPLYASPLDGEWQRDNLNA 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,842
Number of Sequences: 336
Number of extensions: 2647
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)