Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30986.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   3.2  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   3.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   5.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   7.3  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    25   7.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   7.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.3  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   9.7  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   9.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 178 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 41
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 178 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 41
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 261 NGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 428
           +  L  + + N +++   G+Y   N NS   N  +    S SL+G+ S  LN S G
Sbjct: 554 SSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 325 PYEPTPKESEPFKSVVPDNKPF--GYHSIAPFFLSTSN 218
           P   TP +S P +SV   N     G  S+APFFL T+N
Sbjct: 86  PTSSTPLQS-PDESVNKLNSEDEEGNSSVAPFFLDTTN 122


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -2

Query: 310 PKESEPFKSVVPDNKPFGY-----HSIAPFFLSTSNNLT 209
           PK +E F+++    K FGY     H + P F+    ++T
Sbjct: 53  PKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDIT 91


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 337 VFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFF 233
           +F  PYEP PK  +      P N P     +A F+
Sbjct: 204 IFAPPYEPLPKNVKLIYDGNPVNLPPEAEEVAGFY 238


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 379  LPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNK 266
            L + T D   ++ ++FV+  E +P+  E   S++ DNK
Sbjct: 2232 LLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNK 2269


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 335 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHXERVSXKNA 493
           +K L G       R+   RRH V       G+  ++RN S+ + L+D  +  RV+ + A
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAY--RVTDEQA 317


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 313 SVHTDRRIQTAGRGIHRMY 369
           S HT RR QT+G+  H+ Y
Sbjct: 76  SGHTKRRSQTSGKKTHQPY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,738
Number of Sequences: 5004
Number of extensions: 45509
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)