Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30986.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.086
03_05_0977 + 29355824-29357056                                         31   0.61 
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   3.2  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   5.6  
06_01_0091 - 749409-749846                                             27   9.9  
04_04_0340 + 24517562-24520318                                         27   9.9  
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77...    27   9.9  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 300 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 440
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 192 DLLEEHVRLFEVLRKNGAIEW*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 341
           D+L   ++LF  L     + + PNG L S +TD   + S+  G  G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 323 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 451
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 276 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 425
           G TD+ G D  G+  +G  +   +K   S  PLG  ++    V+  LN+SV
Sbjct: 55  GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105


>06_01_0091 - 749409-749846
          Length = 145

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 310 PKESEPFKSVVPDNKPF-GYHSIAPF 236
           P E EP     P+N PF G+HS+  F
Sbjct: 113 PPEPEPSPEPSPENDPFHGFHSLHSF 138


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/74 (20%), Positives = 37/74 (50%)
 Frame = -2

Query: 232 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRIS 53
           L+T  +   +  RSW  +++ +SP+     TI+ +     A   KS+    +   ++ ++
Sbjct: 169 LATIRSRKEADNRSWCIVEQVFSPLLKLLKTINHLVSEAAARNNKSENYKILVKIDAEVN 228

Query: 52  CEYVKTVANVINKN 11
           C  ++   ++I++N
Sbjct: 229 C--LQDALDLIDRN 240


>01_01_0102 +
           769442-770159,770710-770805,771340-771363,771470-772542
          Length = 636

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -1

Query: 332 RLSV*TDT*GVRAIQVCCSGQQTIRLPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLF 153
           RLS    + G   +Q+ CSGQ TI    D PVL    K   ++++ V++       P + 
Sbjct: 53  RLSTQPPSCGAPGMQLSCSGQDTI---LDHPVLGS-CKVTMIYYRHVIM----NAIPLVD 104

Query: 152 NIPH 141
           ++PH
Sbjct: 105 SLPH 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,728
Number of Sequences: 37544
Number of extensions: 269533
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)