Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30986.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       32   0.36 
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      31   0.82 
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           28   5.8  
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     28   5.8  
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)             27   7.6  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
 Frame = -2

Query: 256 YHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSK 92
           Y +++  +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK
Sbjct: 62  YLTLSKNYLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SK 118

Query: 91  RTLTITVYNSRISCEYVKTVAN--VINKN 11
             LT++   S +S  Y+    N   ++KN
Sbjct: 119 NYLTLSKNYSTLSKNYLTLSKNYSTLSKN 147



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -2

Query: 223 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 44
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 43  VKTVANVINKN*KY 2
           +    N +  +  Y
Sbjct: 56  LTLSKNYLTLSKNY 69



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = -2

Query: 256 YHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRK----SKR 89
           Y +++   L+T +    +  R++ T+ +NYS +   +LT   + +NY+ L +     SK 
Sbjct: 5   YLTLSIKVLNTLSKNYSTLSRNYLTLSKNYSTLSKNYLT---LSKNYSTLSKNYLTLSKN 61

Query: 88  TLTITVYNSRISCEYVKTVANVIN 17
            LT++     +S  Y+     V+N
Sbjct: 62  YLTLSKNYLTLSKNYLTLSIKVLN 85


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = -2

Query: 256 YHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSK 92
           Y +++  +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK
Sbjct: 62  YLTLSKNYLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SK 118

Query: 91  RTLTITVYNSRISCEY 44
             LT++   S +S  Y
Sbjct: 119 NYLTLSKNYSTLSKNY 134



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -2

Query: 223 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 44
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 43  VKTVANVINKN*KY 2
           +    N +  +  Y
Sbjct: 56  LTLSKNYLTLSKNY 69



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = -2

Query: 256 YHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRK----SKR 89
           Y +++   L+T +    +  R++ T+ +NYS +   +LT   + +NY+ L +     SK 
Sbjct: 5   YLTLSIKVLNTLSKNYSTLSRNYLTLSKNYSTLSKNYLT---LSKNYSTLSKNYLTLSKN 61

Query: 88  TLTITVYNSRISCEYVKTVANVIN 17
            LT++     +S  Y+     V+N
Sbjct: 62  YLTLSKNYLTLSKNYLTLSIKVLN 85


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -2

Query: 244 APFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRTLTITVY 68
           AP  L+T+NN TC+ R+  +       PI + +L  H  K+    L   + K T T+  Y
Sbjct: 25  APTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKATATMWHY 82

Query: 67  N-SRISCEYVKTVANVINKN 11
           N +  +  Y  + A V + N
Sbjct: 83  NIAAFAIIYYTSCATVWHYN 102


>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 23/90 (25%), Positives = 38/90 (42%)
 Frame = -1

Query: 506 FTTDLHSXKRLFPDARNLQALGPRKDSY*HVQLLGHYAFEADAA*GYIRWIPLPAVCIRL 327
           F+ DL   KRL+ + R +  L  +KD+Y  V++   +      A    +W P   + +  
Sbjct: 4   FSQDL--VKRLYTNPRRIFGLPEQKDTYVDVEIGSEWTIPKAMAYSRAQWTPFAGMKVFG 61

Query: 326 SV*TDT*GVRAIQVCCSGQQTIRLPFDRPV 237
           SV      +R    C  GQ  ++  F   V
Sbjct: 62  SVRRVV--LRGETACIDGQVLLKPGFGEDV 89


>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
          Length = 553

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 224 FKQPNMFFKKVLVYHEGELFPY 159
           FKQ N++   VLV  +G+L+PY
Sbjct: 99  FKQVNVWVNGVLVKAQGDLYPY 120


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 325 PYEPTPKESEPFKSVVPDNKPF 260
           P+ P  +  +PF+SV P  +PF
Sbjct: 599 PFRPEQQPQQPFRSVQPPQQPF 620


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -2

Query: 424 TDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHS 248
           T   N S T  S L   +GT   +P Q     YP  P   + +   S +P+      HS
Sbjct: 431 TSQRNRSSTNESYLRASRGTSQPYPSQSQNTAYPESPDTPQPQASSSFLPEQPRPRSHS 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,053
Number of Sequences: 59808
Number of extensions: 328498
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)