Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30986.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88613-1|BAA13651.1|  436|Homo sapiens hGCMa protein.                  31   3.5  
BC096288-1|AAH96288.1|  436|Homo sapiens glial cells missing hom...    31   3.5  
AL512347-2|CAI14905.1|  436|Homo sapiens glial cells missing hom...    31   3.5  
AB047819-1|BAB18039.1|  436|Homo sapiens chorion-specific transc...    31   3.5  
AB041714-1|BAA94757.1|  436|Homo sapiens chorion-specific transc...    31   3.5  
AB026493-1|BAA77250.2|  436|Homo sapiens GCM motif protein protein.    31   3.5  

>D88613-1|BAA13651.1|  436|Homo sapiens hGCMa protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 409 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFL 230
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P + 
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 229 STSNNL 212
           + + NL
Sbjct: 358 NPAGNL 363


>BC096288-1|AAH96288.1|  436|Homo sapiens glial cells missing
           homolog 1 (Drosophila) protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 409 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFL 230
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P + 
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 229 STSNNL 212
           + + NL
Sbjct: 358 NPAGNL 363


>AL512347-2|CAI14905.1|  436|Homo sapiens glial cells missing
           homolog 1 (Drosophila) protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 409 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFL 230
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P + 
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 229 STSNNL 212
           + + NL
Sbjct: 358 NPAGNL 363


>AB047819-1|BAB18039.1|  436|Homo sapiens chorion-specific
           transcription factor GCMa protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 409 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFL 230
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P + 
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 229 STSNNL 212
           + + NL
Sbjct: 358 NPAGNL 363


>AB041714-1|BAA94757.1|  436|Homo sapiens chorion-specific
           transcription factor GCMa protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 409 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFL 230
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P + 
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 229 STSNNL 212
           + + NL
Sbjct: 358 NPAGNL 363


>AB026493-1|BAA77250.2|  436|Homo sapiens GCM motif protein protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 409 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFL 230
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P + 
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 229 STSNNL 212
           + + NL
Sbjct: 358 NPAGNL 363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,947,067
Number of Sequences: 237096
Number of extensions: 1528845
Number of successful extensions: 2754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2754
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)