Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30986.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032657-1|CAA21732.1| 377|Caenorhabditis elegans Hypothetical ... 31 0.72
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z68882-17|CAI79150.1| 111|Caenorhabditis elegans Hypothetical p... 28 3.9
Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical p... 28 5.1
Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical p... 28 5.1
AF024500-4|AAB70365.1| 335|Caenorhabditis elegans Hypothetical ... 28 5.1
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 27 6.7
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 27 6.7
Z78200-6|CAB01585.2| 524|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AL032657-1|CAA21732.1| 377|Caenorhabditis elegans Hypothetical
protein Y47H9C.1 protein.
Length = 377
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 364 YDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYHSIAPFFLSTSNNLTCSSRRSWS 185
Y GFP V VYP P + + + P+ + F S+A F+++T+N + + +
Sbjct: 175 YAGFPLDSKVNVYPIFSNPITIQNSEVLFPNVETFSL-SLAAFYITTNNGFSFKIKPGYY 233
Query: 184 TMK-ENYSPIYLT 149
+ N + +Y T
Sbjct: 234 NINGTNTTSVYST 246
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 130 IKRNYNALIRKSKRTLTITVYNSRISCEYVKTVANVINKN 11
I RN + +T V NS + C + +TV N++N +
Sbjct: 21 IPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNND 60
>Z68882-17|CAI79150.1| 111|Caenorhabditis elegans Hypothetical
protein C47E12.14 protein.
Length = 111
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 100 KSKRTLTITVYNSRISCEYVKTVANVINK 14
KSK TL ++ +R+S ++VKT NV +K
Sbjct: 58 KSKFTLAQPIFKNRMSADFVKTHKNVGSK 86
>Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical
protein ZC434.6b protein.
Length = 723
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 190 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 62
W++ YS Y L ++ I+R+ + ++ SK I +YNS
Sbjct: 74 WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116
>Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical
protein ZC434.6a protein.
Length = 721
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 190 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 62
W++ YS Y L ++ I+R+ + ++ SK I +YNS
Sbjct: 74 WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116
>AF024500-4|AAB70365.1| 335|Caenorhabditis elegans Hypothetical
protein K06H6.6 protein.
Length = 335
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 188 VYHEGELFPYLFNIPHYTPDK 126
VY G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 27.5 bits (58), Expect = 6.7
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Frame = -2
Query: 487 LXRDSFXMPEIYKLLDQGKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTP 308
L + + ++ L+++ K N S + R ML + + L P +P+
Sbjct: 541 LHQQQIFVEDLIILMNEAKARGGRLNESKSAEFRTMLSRAKH---MLDLKGVHLPLDPSF 597
Query: 307 KESEPFKSVVPDNKPFGYHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF------ 146
+ S SV+PD F + P +S + + ++ + E Y+ I+ T
Sbjct: 598 RLS----SVIPDTASFFKSEMMPAKISFK--VLQPNGKADRNIPEEYTVIFKTGDDLRQD 651
Query: 145 LTIHQIKRNYNALIRKSKRTLTITVYNSRISCEYVKTVANVIN 17
I Q+ R + +++K + L +T Y R Y+K V ++N
Sbjct: 652 QLIQQMVRLIDIILKKGQLDLKLTPYLVRNIYIYIKFVEEIVN 694
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 27.5 bits (58), Expect = 6.7
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Frame = -2
Query: 487 LXRDSFXMPEIYKLLDQGKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTP 308
L + + ++ L+++ K N S + R ML + + L P +P+
Sbjct: 545 LHQQQIFVEDLIILMNEAKARGGRLNESKSAEFRTMLSRAKH---MLDLKGVHLPLDPSF 601
Query: 307 KESEPFKSVVPDNKPFGYHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF------ 146
+ S SV+PD F + P +S + + ++ + E Y+ I+ T
Sbjct: 602 RLS----SVIPDTASFFKSEMMPAKISFK--VLQPNGKADRNIPEEYTVIFKTGDDLRQD 655
Query: 145 LTIHQIKRNYNALIRKSKRTLTITVYNSRISCEYVKTVANVIN 17
I Q+ R + +++K + L +T Y R Y+K V ++N
Sbjct: 656 QLIQQMVRLIDIILKKGQLDLKLTPYLVRNIYIYIKFVEEIVN 698
>Z78200-6|CAB01585.2| 524|Caenorhabditis elegans Hypothetical
protein T04H1.8 protein.
Length = 524
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 463 PEIYKLLDQGKIPTDMFNSSDTMPSRLMLPKG 368
PE+ KLL+ G +PT ++NS + + + +G
Sbjct: 79 PEVTKLLNTGSLPTILWNSKASPEEQRTIMEG 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,813,077
Number of Sequences: 27780
Number of extensions: 249446
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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