Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30986.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   0.67 
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   2.0  
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    29   2.7  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   4.7  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 300 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 416
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 279  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 425
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
            putative similar to Swiss-Prot:P05055 polyribonucleotide
            nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
            phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = -2

Query: 313  TPKESEPFKSVVPDN---------KPFG-YHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 164
            T KE E  +S+ P+          K  G   S++P   ST++NL   S+   STMKEN S
Sbjct: 848  TQKEEEALESIAPEETSAECGEILKQDGKLKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 300 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 416
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,060,407
Number of Sequences: 28952
Number of extensions: 231759
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)