Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30982.Seq
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49947-1|AAA93420.2|  232|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF078157-3|AAG24079.1|  119|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z66497-7|CAE17887.1|  197|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    26   8.5  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    26   8.5  

>U49947-1|AAA93420.2|  232|Caenorhabditis elegans Hypothetical
           protein C30G4.2 protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 57  VMVGRYKILIQNDFXTSMN 1
           + VGRYKIL+  D+  SM+
Sbjct: 126 ITVGRYKILVNKDYLMSMS 144


>AF078157-3|AAG24079.1|  119|Caenorhabditis elegans Hypothetical
           protein F25E5.9 protein.
          Length = 119

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 341 LVRDSIQRDXCSACSGVRPAN-SSGVCMSRPXRCLXLXLQLXEHRS 207
           L   S  RD C+ C G +P + S   CM  P     + + L + R+
Sbjct: 45  LPSSSFCRDLCAICGGAKPTSLSIEECMCAPHSFFLVSVVLLKRRT 90


>Z66497-7|CAE17887.1|  197|Caenorhabditis elegans Hypothetical
           protein K08F8.7 protein.
          Length = 197

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 23  FCIKILYLPTITRYWSQFSLKVLGLL 100
           FCI ++++  +++YW+     V GLL
Sbjct: 32  FCIIVIFIIGLSQYWTNRVSAVFGLL 57


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 102  TNKPSTFSENCDQYRVMVGRYKILI 28
            T +P    ENCD YR ++ R  I +
Sbjct: 1040 TEQPDVRFENCDYYRSLINRRGIQV 1064


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 102  TNKPSTFSENCDQYRVMVGRYKILI 28
            T +P    ENCD YR ++ R  I +
Sbjct: 1040 TEQPDVRFENCDYYRSLINRRGIQV 1064


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,474,259
Number of Sequences: 27780
Number of extensions: 70303
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)