Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30982.Seq
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 341 LVRDSIQRDXCSACSGVRPA 282
           L   ++Q+D CS   G+ P+
Sbjct: 342 LALHNLQKDVCSKLKGLCPS 361


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 285 GQLIRSMYVPXTPVPXIASSAX*TPL 208
           GQL  S   P  P+P +++ +   PL
Sbjct: 407 GQLPPSAGAPMPPIPNMSNMSGMPPL 432


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 341 LVRDSIQRDXCSACSGVRPA 282
           L   ++Q+D CS   G+ P+
Sbjct: 432 LALHNLQKDVCSKLKGLCPS 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,035
Number of Sequences: 438
Number of extensions: 854
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)