Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30979.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4C87 Cluster: PREDICTED: similar to GA18613-PA...    42   0.008
UniRef50_A7J1L1 Cluster: NADH dehydrogenase subunit 2; n=1; Tric...    36   0.51 
UniRef50_Q7R9A5 Cluster: Erythrocyte membrane-associated antigen...    34   1.5  
UniRef50_Q8IBA9 Cluster: Putative uncharacterized protein PF08_0...    32   8.2  

>UniRef50_UPI00015B4C87 Cluster: PREDICTED: similar to GA18613-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA18613-PA - Nasonia vitripennis
          Length = 420

 Score = 41.9 bits (94), Expect = 0.008
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 297 LKTQTTATVKNKVTQ-DTRVWKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMGRIRTS 473
           L   TT   +N+     T+ WK        +   +YCLMLSK RLTSLVV+T+MG    +
Sbjct: 73  LNPDTTVDSQNQSKAIATKTWKWGKIEIDPTKLHKYCLMLSKIRLTSLVVITAMGGYAIA 132

Query: 474 TCP 482
             P
Sbjct: 133 PAP 135


>UniRef50_A7J1L1 Cluster: NADH dehydrogenase subunit 2; n=1;
           Trichobilharzia regenti|Rep: NADH dehydrogenase subunit
           2 - Trichobilharzia regenti
          Length = 274

 Score = 35.9 bits (79), Expect = 0.51
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -2

Query: 438 LMMLTVI*IASNNTVPYCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELYFSSFVLLIF 259
           +++L V  +  +  + Y SS +M VF  +LW L    S+ L    +   L  SS  LL F
Sbjct: 185 IVLLVVYFVWGSGVIYYLSSVNMTVFGYVLWLLAVPLSISLYYKIYTCYLLCSSLYLLFF 244

Query: 258 W 256
           W
Sbjct: 245 W 245


>UniRef50_Q7R9A5 Cluster: Erythrocyte membrane-associated antigen;
           n=4; Plasmodium (Vinckeia)|Rep: Erythrocyte
           membrane-associated antigen - Plasmodium yoelii yoelii
          Length = 759

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 RRINLIMSYLKVIHCTLCLKHGYVGVY-SKPVLFKITNNTLFQHLP 258
           +R NL +  + V+ CT  LKH  + VY ++ + F++ NN +  ++P
Sbjct: 9   KRFNLFLISIVVLICTFGLKHNLIIVYKNEDISFRVLNNDIGTNIP 54


>UniRef50_Q8IBA9 Cluster: Putative uncharacterized protein
           PF08_0013; n=3; Plasmodium|Rep: Putative uncharacterized
           protein PF08_0013 - Plasmodium falciparum (isolate 3D7)
          Length = 943

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 124 RRINLIMSYLKVIHCTLC-LKHGYVGVYSKPVLFKITNNTLFQHLPEY 264
           +RIN    Y ++  CTLC +  G+V ++S+ ++  + N     H+ EY
Sbjct: 799 KRINTNTIYYRIFCCTLCGMSGGFVNIFSEQIISVLPNEKF--HMFEY 844


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,756,318
Number of Sequences: 1657284
Number of extensions: 9644321
Number of successful extensions: 20639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20633
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)