Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30979.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    30   1.2  
08_02_0794 + 21265399-21265683,21266047-21266160,21266861-212671...    27   6.3  
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896...    27   8.4  

>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 396 VPYCSSCHMMVFPSILWC--LG*LYSLPLQLSEF*VELYFSSFVLLIFWQMLEECV 235
           VP+ S+C + +F  +  C  LG L  +PL +SE+ + ++  S     F+  + +CV
Sbjct: 393 VPFFSACFLAMFSILNLCFNLGLLPEIPLPVSEYDILVHVVSAEFQNFFSWVLKCV 448


>08_02_0794 +
           21265399-21265683,21266047-21266160,21266861-21267126,
           21267336-21267834
          Length = 387

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 363 TPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMGRIRTS 473
           +P++  K ++  YCL+L +    S  + TS GR+ T+
Sbjct: 320 SPTFHFKWSSYDYCLVLDQRCSVSPTISTSSGRVTTT 356


>07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,
            8963991-8964128,8964206-8964355,8964436-8964683,
            8964825-8964953,8965735-8965960,8966909-8966975,
            8967488-8967551,8968902-8969000,8969074-8969157,
            8969240-8969321,8969412-8969460,8969664-8969769,
            8970650-8970734,8970814-8970917,8970994-8971109,
            8971187-8971373,8972005-8972113,8972633-8972761,
            8973365-8973449,8973812-8973947,8974078-8974230,
            8974488-8974634,8974801-8974941,8975580-8975903
          Length = 1400

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 333  LYSLPLQLSEF*VELYFSSFVLLIFWQMLEE 241
            LYS  L+L++   EL++S  +    WQ+ EE
Sbjct: 1359 LYSHYLELNDMLEELFYSGMMTKELWQVFEE 1389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,092
Number of Sequences: 37544
Number of extensions: 251728
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)