Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30979.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_40209| Best HMM Match : Ank (HMM E-Value=0)                         27   8.6  
SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3)                    27   8.6  
SB_21795| Best HMM Match : Pox_A_type_inc (HMM E-Value=6)              27   8.6  

>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 121  ARRINLIMSYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKT 279
            A R+N IM Y K+    L L+ G V  Y  P       + +F+HL E   H T
Sbjct: 1201 AHRLNTIMDYDKI----LVLERGRVAEYGTPQELMEMPDGVFRHLYESHVHHT 1249


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 108 QLLNTII--YSKRIRSSVMHNNTIMFFEY 28
           QL  ++I   +KR+R SV+HNN  + F Y
Sbjct: 373 QLFRSVIDEETKRVRDSVIHNNETLSFTY 401


>SB_40209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 885

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 INLIMSYLKVIHCTLCLKH-GYVGVYSKPVLFKITNNTLFQHLPEYQQH 273
           + L ++YL V+   L +K  G  G+YS P    IT+ T   H P +  H
Sbjct: 721 VTLFLAYLNVL---LYIKRIGSSGLYSDPYNKIITSTTHHHHHPYHHHH 766


>SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 247 QHLPEYQQHKTGEVKFHLKLRQLQR*RIKSPKT 345
           QHL +Y + + G +K HLK  + Q+  IK P T
Sbjct: 71  QHL-KYDREQKGPIKQHLKYDREQKGPIKLPST 102


>SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3)
          Length = 650

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 127 RINLIMSYLKVIHCTLCLKHGYV--GVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKFHL 300
           R + +  YLK       LK   V   +    VL K+T + +FQ+L E+Q  +      +L
Sbjct: 534 REHQVFQYLKEHQVFQNLKERQVLQNLKEHQVLQKLTKHQVFQYLKEHQVFQNLREYKYL 593

Query: 301 KLRQLQR*RIKSPKTP 348
           + +Q+ +   ++P  P
Sbjct: 594 RNQQVSKIPARTPSIP 609


>SB_21795| Best HMM Match : Pox_A_type_inc (HMM E-Value=6)
          Length = 158

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 463 ILPIDVNTTNDVNRDLDSIKQYCPVLLFLSYDGVS 359
           ILP+ VNTT++    L     Y PV+L ++   ++
Sbjct: 93  ILPLPVNTTDNFGNPLIEGNSYIPVILSVATGSIN 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,622
Number of Sequences: 59808
Number of extensions: 316515
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)