Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30979.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25851-1|AAB59359.2| 1179|Homo sapiens integrin alpha E precurso...    31   2.2  
BC117207-1|AAI17208.1| 1179|Homo sapiens integrin, alpha E (anti...    31   2.2  
BC113436-1|AAI13437.1| 1179|Homo sapiens integrin, alpha E (anti...    31   2.2  
AF168787-6|AAF43107.1| 1127|Homo sapiens HUMINAE protein.              31   2.2  
AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.     29   6.8  

>L25851-1|AAB59359.2| 1179|Homo sapiens integrin alpha E precursor
            protein.
          Length = 1179

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 169  TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
            TL  +HG+V V SKP +  +       H  E+  H  GE  F
Sbjct: 958  TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999


>BC117207-1|AAI17208.1| 1179|Homo sapiens integrin, alpha E (antigen
            CD103, human mucosal lymphocyte antigen 1; alpha pol
            protein.
          Length = 1179

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 169  TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
            TL  +HG+V V SKP +  +       H  E+  H  GE  F
Sbjct: 958  TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999


>BC113436-1|AAI13437.1| 1179|Homo sapiens integrin, alpha E (antigen
            CD103, human mucosal lymphocyte antigen 1; alpha pol
            protein.
          Length = 1179

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 169  TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
            TL  +HG+V V SKP +  +       H  E+  H  GE  F
Sbjct: 958  TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999


>AF168787-6|AAF43107.1| 1127|Homo sapiens HUMINAE protein.
          Length = 1127

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 169  TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
            TL  +HG+V V SKP +  +       H  E+  H  GE  F
Sbjct: 906  TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 947


>AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = +3

Query: 294 PLKT--QTTATVKNKVTQDTRVWKETPSYDRKSNTGQYCL---MLSKSRLTSLVV-LTSM 455
           PL T   TT TVK  VT  T  ++ET +    ++     L   M S +RLTS +   T++
Sbjct: 331 PLSTIVATTGTVKTTVTSSTATFRETTTLTSTTDISTESLMTAMTSTTRLTSAITSKTTL 390

Query: 456 GRIRTS 473
             ++T+
Sbjct: 391 TSLKTT 396


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,828,245
Number of Sequences: 237096
Number of extensions: 1511288
Number of successful extensions: 2292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2292
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)