Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30979.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    30   1.5  
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    30   1.5  
AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse tran...    29   3.5  
AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p pro...    28   8.1  

>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMG 458
           W  +P Y     T      LSK RLTSLVV+T+MG
Sbjct: 61  WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMG 94


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMG 458
           W  +P Y     T      LSK RLTSLVV+T+MG
Sbjct: 61  WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMG 94


>AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 76

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 260 SGRCWKSVLLVILNKTGFE*TPTYPC 183
           SGR W  +L  +L K GF   P+ PC
Sbjct: 36  SGREWNKLLNEVLQKIGFSSCPSEPC 61


>AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p
           protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -3

Query: 317 CSCLSFKWNFTSP-VLCC*YSGRCWKSVLLVILNKTGFE*TPTYPCFRH-KVQCITFKYD 144
           C+C+  KWN TS  V  C     C +S++  +  K+ F   P   C R  K+Q +  K+ 
Sbjct: 27  CACVGAKWNQTSQRVEQC-----CQRSLITALKKKSPFFAPPPPLCQRKLKIQIVLQKFW 81

Query: 143 I-IKFIRLAQHFDS 105
           +  KF  L  H  S
Sbjct: 82  LPWKFKSLCVHLFS 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,448
Number of Sequences: 53049
Number of extensions: 462819
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)