Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30979.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    27   10.0 
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    27   10.0 
AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    27   10.0 

>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 121 ARRINLIMSYLKVIHCTLCLKHGYVGVY 204
           A+RI L  SYL +IH   CL   Y  +Y
Sbjct: 443 AKRIALFSSYLFIIHPVFCLNITYFHLY 470


>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 TLPASARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKS 386
           T   S  I  ++ W+S    +  TT+ V   +  + R WK+   +D KS
Sbjct: 131 TSSLSLFIGISELWKSIKRSENNTTSLVAILLLSNIRKWKDQRKFDAKS 179


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 240 TLPASARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKS 386
           T   S  I  ++ W+S    +  TT+ V   +  + R WK+   +D KS
Sbjct: 131 TSSLSLFIGISELWKSIKRSENNTTSLVAILLLSNIRKWKDQRKFDAKS 179


>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 352 YGRKHHHMTGRAIRDSIV*CYLNH 423
           Y   H+ MTG+A RD++V  Y+ H
Sbjct: 412 YKLYHYKMTGKATRDTLVDKYILH 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,566,715
Number of Sequences: 27780
Number of extensions: 240021
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)