Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30978.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.40 
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)             28   4.9  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 28   4.9  
SB_3663| Best HMM Match : MBT (HMM E-Value=0)                          28   4.9  
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      28   4.9  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   4.9  
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           28   4.9  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  27   6.5  
SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)                 27   6.5  
SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  

>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQ 350
           A    +KE ++ RK+++GKP+P+  K    P RK +K  + +  +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336


>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
           Y +GV NR+ L L DE DP    K  E+
Sbjct: 6   YSIGVNNRFGLLLSDEEDPETTFKESEK 33


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKG 320
           G+ +QK+++  RK N+GKP P  +K + +    G
Sbjct: 46  GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79


>SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)
          Length = 295

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 319 PFRXGTVTPLAGLGSGLP 266
           P   GTV PLAG G GLP
Sbjct: 180 PSTSGTVAPLAGYGYGLP 197


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 207 SARAGEGAQ--KEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGE 368
           +A  GE A    +D  + K +K K +P+  K VT+  + G+K    VK +   S +
Sbjct: 135 NADYGEAASLTADDSTAHKSDK-KHDPEAKKQVTITVQPGVKPKPTVKKRSTPSAD 189


>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
          Length = 327

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVP 308
           SA + +  ++E++   KE + KP+P+P     +P
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLP 191


>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGKPEPKPAKG 296
           EG  KED    KE KGK E    +G
Sbjct: 875 EGKNKEDNEKEKEKKGKDEKDEKEG 899


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 213 RAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKGK 383
           + G+GA ++++ + K+ KG  E +  K  T       K       Q   +GEQ+KG+
Sbjct: 25  KEGKGATEQEKGAIKQGKGATEQE--KEATEQGNGASKQGTGASEQGKGAGEQEKGE 79


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXR-KGIKXTQNVKSQDIXSGEQQK 377
           KSA  GEG +   ++ +K N G    K  K +T   + K  +  +  K Q I   +++K
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQEDKEKK 550


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKP 287
           + SA   + A++E+  +R+EN   P+P+P
Sbjct: 672 LSSAEPSKAAEQEETSTREENSVDPQPEP 700


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQK 377
           K AR     + ++Q++ +E K +   K A+      R+G K  +  K+++    ++QK
Sbjct: 99  KRARTETTRRGQEQKTPEEGKNRNHQKKARTENTRRRQGEKPPEEGKNRNTRKRQEQK 156


>SB_33142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKG 380
           ++  R G+  QK  ++++K  KGK      KG     +KG K     K        Q+K 
Sbjct: 3   MQEERDGKIRQKGQKKAKKAKKGKKGAMGKKGAMGKKQKGKKRRDEGKK---GKKRQKKA 59

Query: 381 KGPXRP 398
           + P +P
Sbjct: 60  RRPVQP 65


>SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)
          Length = 431

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 186 RSS*CVKSARAGEGAQKEDQRSRKENKGKPEPKPAK----GVTVPXRKGIKXTQNVKSQD 353
           RS+   +SA  G   Q ++ R  +   GK +  P        +VP  KG+  T NV  Q+
Sbjct: 365 RSNSSQQSAITGRIHQAQETRRHRLQLGKSKSSPVSTSKTSSSVPENKGVNCTSNVGGQN 424


>SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +3

Query: 219 GEGAQKEDQR------SRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQD 353
           G G Q  D +      SR E+ G P    + G+  P ++G++   N  +QD
Sbjct: 74  GRGGQHRDGKLCVGTVSRPEHPGPPPGLESAGIRHPKQRGVRLITNENTQD 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,311
Number of Sequences: 59808
Number of extensions: 180494
Number of successful extensions: 474
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)