Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30978.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021407-1|AAX33555.1|  720|Drosophila melanogaster LD06749p pro...    30   1.5  
AE014296-3628|AAF51788.3|  720|Drosophila melanogaster CG7421-PA...    30   1.5  
AE014296-3627|AAF51789.2|  686|Drosophila melanogaster CG7421-PB...    30   1.5  
AY051984-1|AAK93408.1|  838|Drosophila melanogaster LD45365p pro...    30   2.0  
AF220364-1|AAF37265.1|  838|Drosophila melanogaster Plenty of SH...    30   2.0  
AF162774-1|AAF68853.2|  720|Drosophila melanogaster Nopp140-like...    30   2.0  
AE013599-2508|AAF57833.1|  838|Drosophila melanogaster CG4909-PA...    30   2.0  

>BT021407-1|AAX33555.1|  720|Drosophila melanogaster LD06749p
           protein.
          Length = 720

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKG 380
           + + +A  G   ED  S  E+   P+ KPA    +   K +K   +  S+D  S E++K 
Sbjct: 58  IPAIKATAGDSSEDSDSDSESDAAPK-KPATAPALTNGKAVKKAASSTSEDSDSEEEKKP 116

Query: 381 KGPXRP 398
                P
Sbjct: 117 AAKATP 122


>AE014296-3628|AAF51788.3|  720|Drosophila melanogaster CG7421-PA,
           isoform A protein.
          Length = 720

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKG 380
           + + +A  G   ED  S  E+   P+ KPA    +   K +K   +  S+D  S E++K 
Sbjct: 58  IPAIKATAGDSSEDSDSDSESDAAPK-KPATAPALTNGKAVKKAASSTSEDSDSEEEKKP 116

Query: 381 KGPXRP 398
                P
Sbjct: 117 AAKATP 122


>AE014296-3627|AAF51789.2|  686|Drosophila melanogaster CG7421-PB,
           isoform B protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKG 380
           + + +A  G   ED  S  E+   P+ KPA    +   K +K   +  S+D  S E++K 
Sbjct: 58  IPAIKATAGDSSEDSDSDSESDAAPK-KPATAPALTNGKAVKKAASSTSEDSDSEEEKKP 116

Query: 381 KGPXRP 398
                P
Sbjct: 117 AAKATP 122


>AY051984-1|AAK93408.1|  838|Drosophila melanogaster LD45365p
           protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQK 377
           ++A AG+G +K ++   +  + KP+P PA+ V  P  + ++   + +S      +Q++
Sbjct: 78  QNAAAGKGEEKGEETETQPERAKPQP-PAESVAPPDNQLLQLQSHQQSHQPARHKQRR 134


>AF220364-1|AAF37265.1|  838|Drosophila melanogaster Plenty of SH3s
           protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQK 377
           ++A AG+G +K ++   +  + KP+P PA+ V  P  + ++   + +S      +Q++
Sbjct: 78  QNAAAGKGEEKGEETETQPERAKPQP-PAESVAPPDNQLLQLQSHQQSHQPARHKQRR 134


>AF162774-1|AAF68853.2|  720|Drosophila melanogaster Nopp140-like
           nucleolar protein protein.
          Length = 720

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQK 377
           + + +A  G   ED  S  E+   P+ KPA    +   K +K   +  S+D  S E++K
Sbjct: 58  IPAIKATAGDSSEDSDSDSESDAAPK-KPATAPALTNGKAVKKAASSTSEDSDSEEEKK 115


>AE013599-2508|AAF57833.1|  838|Drosophila melanogaster CG4909-PA
           protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQK 377
           ++A AG+G +K ++   +  + KP+P PA+ V  P  + ++   + +S      +Q++
Sbjct: 78  QNAAAGKGEEKGEETETQPERAKPQP-PAESVAPPDNQLLQLQSHQQSHQPARHKQRR 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,608,934
Number of Sequences: 53049
Number of extensions: 279099
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)