Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30978.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   4.3  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   4.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   4.3  
M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKGKGPXRPVDXNV 413
            ++KE +GKPE K  K  T      I  T    ++D+   +Q + +   R  + +V
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPAKRTTETSV 9225


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKGKGPXRPVDXNV 413
            ++KE +GKPE K  K  T      I  T    ++D+   +Q + +   R  + +V
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPAKRTTETSV 9245


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQKGKGPXRPVDXNV 413
            ++KE +GKPE K  K  T      I  T    ++D+   +Q + +   R  + +V
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPAKRTTETSV 9245


>M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical
           protein ZK370.5 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 319 PFRXGTVTPLAGLGSGLP 266
           P R GT  PLAG G GLP
Sbjct: 310 PPRDGTQAPLAGYGYGLP 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,259,882
Number of Sequences: 27780
Number of extensions: 131360
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)