Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30978.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             30   1.00 
At5g54020.1 68418.m06719 expressed protein                             27   5.3  
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi...    27   7.0  
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p...    27   9.3  
At3g17070.1 68416.m02178 peroxidase, putative similar to peroxid...    27   9.3  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKG-KPEPKPAKGVTVPXRKGIKXTQNVKSQDIXSGEQQK 377
           E  Q   + S K  KG K E K AK V     K +  T+N       SGE  K
Sbjct: 773 ENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 41  DKMSPY*CAESNPITSKYCVIKSSR 115
           D  +PY C E N +  KYC+ K  R
Sbjct: 154 DDRNPYVCLECNLMVHKYCIEKLPR 178


>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor [GI:3168840];
           nearly identical to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 355

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPXRK-GIKXTQNVKSQDIXSGEQQ 374
           ++A A EG +KE+++   E+KG+ E K  K  T   +K G       ++ D   GE++
Sbjct: 248 EAAAAAEGEKKEEEKGEGESKGE-EGKDDKAKTDEEKKEGDGGKGEGEAADNGGGEEE 304


>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 462

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGKPEPKPAKGVTVPXRKG 320
           E +++++ RS ++ K K   KPAK V  P RKG
Sbjct: 231 EESEEQEVRSLRKRKRK---KPAKSVEKPKRKG 260


>At3g17070.1 68416.m02178 peroxidase, putative similar to peroxidase
           GB:AAD37376 [Glycine max]
          Length = 339

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 171 EKSVSVHYSHTVGILHCD 118
           E+SV++  +HT+G+ HC+
Sbjct: 197 EESVAIMGAHTIGVTHCN 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,877,110
Number of Sequences: 28952
Number of extensions: 125087
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)